View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_30 (Length: 342)
Name: NF11901_high_30
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_30 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 18 - 229
Target Start/End: Complemental strand, 22675091 - 22674884
Alignment:
| Q |
18 |
aaaatgagtgttattaacattgctcttgtatgtaataagatgttgagggcacttgacaagttgaggtgttgaaatggcattggtgatagttaaaacttaa |
117 |
Q |
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| T |
22675091 |
aaaatgagtgttattaacattgctc--gtatataataagatgttgaaggcac--gacaagttgaggtgttcaaatggcattggtgatagttaaaacttaa |
22674996 |
T |
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| Q |
118 |
aagaattcacctagatttaattcaagcgttctttgtgtagtgctacttactttcaatcacatcaagaatcatattcttgataatcacatcacatttctat |
217 |
Q |
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| T |
22674995 |
aagaattcacctagatttaattcaagcgttctttgtgtagtgctacttactttcaatcacatcaagaatcatattcttgataatcacatcacatttctgt |
22674896 |
T |
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| Q |
218 |
tccacttatatt |
229 |
Q |
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|||| ||||||| |
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| T |
22674895 |
tccatttatatt |
22674884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 321
Target Start/End: Complemental strand, 22674711 - 22674615
Alignment:
| Q |
224 |
tatatttaattactacagtatacaaagccaccacatttatcacggttaagaatcttactagtaattaaaacataaaaaatatgtcttctgaattggtt |
321 |
Q |
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| T |
22674711 |
tatatttaattactacattatacaaagctaccacatttatcacggttaagaatcttactagtaatttaaacttaaaaaa-atgccttctgaattggtt |
22674615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 253 - 301
Target Start/End: Original strand, 11867280 - 11867328
Alignment:
| Q |
253 |
accacatttatcacggttaagaatcttactagtaattaaaacataaaaa |
301 |
Q |
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| T |
11867280 |
accacatttatcacggttaagaatattactagtaattaacatataaaaa |
11867328 |
T |
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