View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_59 (Length: 230)
Name: NF11901_high_59
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_59 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 10981983 - 10982183
Alignment:
| Q |
18 |
gattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatag |
117 |
Q |
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| T |
10981983 |
gattaccctgacggattcaatgattctatttctgagaataaagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatag |
10982082 |
T |
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| Q |
118 |
tgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatggtattccatccattttctgtactggaccttt |
217 |
Q |
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| T |
10982083 |
tgaacacttttgatggtattgaaggaagagcaattaaagctttgaatgaaggattatttattcctgatggtattccatccattttctgtactggaccttt |
10982182 |
T |
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| Q |
218 |
g |
218 |
Q |
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| T |
10982183 |
g |
10982183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
87 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
186 |
Q |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
187 |
g---tattccatccattttctgtactggacc |
214 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 218
Target Start/End: Original strand, 11002265 - 11002413
Alignment:
| Q |
73 |
tgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggatt |
172 |
Q |
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| T |
11002265 |
tgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtttgaatgaaggggt |
11002364 |
T |
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| Q |
173 |
atttattcctaatgg---tattccatccattttctgtactggacctttg |
218 |
Q |
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| T |
11002365 |
atgtgttcctgatggaacaactccatccattttttgtattggacctttg |
11002413 |
T |
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