View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_high_7 (Length: 551)
Name: NF11901_high_7
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 514; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 1 - 534
Target Start/End: Complemental strand, 34137547 - 34137014
Alignment:
| Q |
1 |
tctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaagga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137547 |
tctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaagga |
34137448 |
T |
|
| Q |
101 |
aattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttc |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137447 |
aattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttc |
34137348 |
T |
|
| Q |
201 |
tttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactgga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137347 |
tttgctcagagtttggaggagaagaggaaggttgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactgga |
34137248 |
T |
|
| Q |
301 |
aagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccaca |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
34137247 |
aagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaatttattcaatggtctaatccatccccaca |
34137148 |
T |
|
| Q |
401 |
atacccttcacacttcaggtagttatatatttcatcttcaatggccatttcgattattcaaaagtatatttttaaaatttatgtgaacataagcagggct |
500 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34137147 |
attcccttcacacttcaggtagttatatatttcatcttcaatcgccatttagattattcaaaagtatatttttaaaatttatgtgaacataagcagggct |
34137048 |
T |
|
| Q |
501 |
atagttgaagagtataatgaagagatggaaaagt |
534 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
34137047 |
atagttgaagagtataatgaagagatggaaaagt |
34137014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 34133636 - 34133213
Alignment:
| Q |
1 |
tctcaatcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaagga |
100 |
Q |
| |
|
|||| ||||| ||||||||||||||||||| |||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||| |||||||| |
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|
| T |
34133636 |
tctccatcatcgaagccaaaggaattcccgaaattgacctctctccaattcttcaccatgcagttccaaatccatctgatattgaaaacttggtgaagga |
34133537 |
T |
|
| Q |
101 |
aattggaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttc |
200 |
Q |
| |
|
|||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||||||| |||||| ||| ||||||| |
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|
| T |
34133536 |
gattggaagtgcaagcaaggagtggggtttctttcaagtcacaaaccatggagtccctttgagtctaaggcagagacttgaggaagcttctagattgttc |
34133437 |
T |
|
| Q |
201 |
tttgctcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactgga |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||| ||||||| |||||||||||||||||||| || |||||||||||||| ||||||| |
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|
| T |
34133436 |
tttgctcagagtttggaggagaagaagaaggttgctagagatgaggtcaatcctactggttattatgatacagagcataccaaaaatgttagagactgga |
34133337 |
T |
|
| Q |
301 |
aagaagtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccaca |
400 |
Q |
| |
|
|||||||| |||||||||| | | ||||| || || ||||||| || |||||||||| | |||||| |||||||||||| |||||| ||| || || |
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|
| T |
34133336 |
aagaagtgtttgattttctttctcaagatcctacattagttcctcggagttctgatgaacatgatgatggtgttattcaatggactaatcaatcacctca |
34133237 |
T |
|
| Q |
401 |
atacccttcacacttcaggtagtt |
424 |
Q |
| |
|
||| ||| |||| ||||||||||| |
|
|
| T |
34133236 |
atatcctccacaattcaggtagtt |
34133213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 7 - 424
Target Start/End: Complemental strand, 34141204 - 34140790
Alignment:
| Q |
7 |
tcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattgg |
106 |
Q |
| |
|
|||| ||||||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||| ||||| |
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|
| T |
34141204 |
tcatagaagccaaaggtattccagaaattgatctctctccaatattccacaatgaagttccaaatccatctgctattgaaagcttagtcaaggagattgg |
34141105 |
T |
|
| Q |
107 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgct |
206 |
Q |
| |
|
|||||||||||||| |||||| ||||| |||||||||||||||||||||||| |||||| |||||||| |||||||||||||||| ||||||||||||| |
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|
| T |
34141104 |
aagtgcatgcaaagcgtggggattctttaaagtcacaaaccatggagtccctttgagtctcaggcagaggcttgatgaagctgctagattgttctttgct |
34141005 |
T |
|
| Q |
207 |
cagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaag |
306 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||| |||| |||||||||||||||||| || |||| |||||| |||||||| ||| |||||||| |
|
|
| T |
34141004 |
cagagtttggaggagaagaagaaggttgctagagatgagatcattccaactggttattatgacactgaactcaccaagaatgttagagacatgaaagaag |
34140905 |
T |
|
| Q |
307 |
tgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaataccc |
406 |
Q |
| |
|
|| |||||||| | |||| || | |||| ||||||| | | || ||||||| ||||||| |||||||||||||| ||||||| | || | |||||| |
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|
| T |
34140904 |
tgtttgatttttacaccaatga---ccctttctttcctctcactcctcatgaaaatgatgatcgagttattcaatggtgtaatccaacacctccataccc |
34140808 |
T |
|
| Q |
407 |
ttcacacttcaggtagtt |
424 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
34140807 |
ttcaaacttcaggtagtt |
34140790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 6 - 397
Target Start/End: Complemental strand, 34127358 - 34126967
Alignment:
| Q |
6 |
atcattgaagccaaaggaattcccgtaattgacctctctccaatattccacaatgaagttccaaatccatctgatattgaaaacttagtgaaggaaattg |
105 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||| |||||||||||| ||||||||| | ||| ||||| |||||| | ||| |||||| | |||| |
|
|
| T |
34127358 |
atcattgaagccgaaggaattcccgaaattgacctctcaccaatattccaccatgaagttcaagatcaatctgctattgatagcttggtgaagaagattg |
34127259 |
T |
|
| Q |
106 |
gaagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgc |
205 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||| |||||||||| ||||||| |||| ||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
34127258 |
gaagtgcatgcaaggaatggggcttctttcaagttacaaaccatgaggtccctttgagtattaggcaaagacttgatgaagctgctagattgttctttgc |
34127159 |
T |
|
| Q |
206 |
tcagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaa |
305 |
Q |
| |
|
||| |||||||||||||| | |||| |||| |||||||| |||| |||| |||||||| ||||| ||| |||||||| ||||| || |||||| |||| |
|
|
| T |
34127158 |
tcaaagtttggaggagaaaatgaaggttgccagagatgagatcacaccaattggttattttgataaagagcacaccaagaatgtaagaaactggatagaa |
34127059 |
T |
|
| Q |
306 |
gtgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatcccc |
397 |
Q |
| |
|
||| |||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
34127058 |
gtgtttgattttttcgccagagatcccactttggttcctctgaattgtgatgaaaatgatgatcaagttattcaatggtctaatccgtcccc |
34126967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 107 - 417
Target Start/End: Complemental strand, 34143587 - 34143277
Alignment:
| Q |
107 |
aagtgcatgcaaagagtggggtttcttccaagtcacaaaccatggagtcccttcgagtcttaggcagagacttgatgaagctgctaaattgttctttgct |
206 |
Q |
| |
|
|||||| ||||| || ||||||||||||||||| ||||| ||||| |||||| | | ||| |||| | | | || |||||| |||| ||||||| || |
|
|
| T |
34143587 |
aagtgcttgcaaggaatggggtttcttccaagttacaaatcatggtgtccctcccactctaaggctcaaaatggaagaagcttctaagatgttcttcgca |
34143488 |
T |
|
| Q |
207 |
cagagtttggaggagaagaggaagattgctagagatgaaatcaatccaactggttattatgatacagaacacaccaaaaatgttagggactggaaagaag |
306 |
Q |
| |
|
||||| ||||||| |||| ||||||| | | |||||| | | | |||||||| |||||||||| |||||||| ||||| || ||||||||||||| |
|
|
| T |
34143487 |
cagagcctggaggataagaagaagattaccacagatgataccggtttgcctggttatcatgatacagagcacaccaagaatgtaagagactggaaagaag |
34143388 |
T |
|
| Q |
307 |
tgcttgattttctcgccaacgatcccactttggttcctctgaattctgatgaaaacgatgatcaagttattcaatggtctaatccatccccacaataccc |
406 |
Q |
| |
|
|| ||||||||||| | || || || ||||||||||||||||||||||||||| ||||||||||||| | | | ||| ||||||||||||| |||||||| |
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|
| T |
34143387 |
tgtttgattttctctctaatgaccctactttggttcctctgaattctgatgaacacgatgatcaagtcacttactggactaatccatcccctcaataccc |
34143288 |
T |
|
| Q |
407 |
ttcacacttca |
417 |
Q |
| |
|
| ||||||||| |
|
|
| T |
34143287 |
tccacacttca |
34143277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 471 - 533
Target Start/End: Complemental strand, 34131386 - 34131324
Alignment:
| Q |
471 |
tttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaag |
533 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||||||||||| | ||||| |||||||| |
|
|
| T |
34131386 |
tttaaaattgatgtctacatgagcagggctatacttgaagagtatattcaagaggtggaaaag |
34131324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 533
Target Start/End: Complemental strand, 34140237 - 34140173
Alignment:
| Q |
469 |
tttttaaaatttatgtgaacataagcagggctatagttgaagagtataatgaagagatggaaaag |
533 |
Q |
| |
|
||||||||||| |||| ||||| || || | |||| |||||||||||| ||||||||||||||| |
|
|
| T |
34140237 |
tttttaaaattgatgtcaacatgagtagagttataattgaagagtatatcgaagagatggaaaag |
34140173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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