View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_1 (Length: 1179)

Name: NF11901_low_1
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_1
NF11901_low_1
[»] chr5 (13 HSPs)
chr5 (175-722)||(29866607-29867151)
chr5 (175-512)||(29846380-29846704)
chr5 (586-722)||(29846821-29846957)
chr5 (858-936)||(8886625-8886703)
chr5 (287-340)||(27488723-27488776)
chr5 (294-348)||(40824079-40824134)
chr5 (490-556)||(40156093-40156159)
chr5 (20-63)||(29846221-29846265)
chr5 (294-346)||(40693130-40693182)
chr5 (295-346)||(3944990-3945041)
chr5 (294-353)||(35395007-35395065)
chr5 (300-346)||(41863886-41863932)
chr5 (302-331)||(41863143-41863172)
[»] chr2 (9 HSPs)
chr2 (418-565)||(9491566-9491714)
chr2 (294-346)||(40859969-40860021)
chr2 (302-353)||(32217003-32217054)
chr2 (294-346)||(35155936-35155988)
chr2 (294-346)||(35468955-35469007)
chr2 (511-562)||(28646452-28646503)
chr2 (302-353)||(32226306-32226357)
chr2 (289-347)||(33201410-33201468)
chr2 (289-346)||(27171071-27171128)
[»] chr1 (9 HSPs)
chr1 (425-562)||(12685445-12685583)
chr1 (298-350)||(1146648-1146700)
chr1 (306-346)||(12174493-12174533)
chr1 (294-346)||(12294648-12294700)
chr1 (302-353)||(42470278-42470329)
chr1 (300-342)||(33928082-33928124)
chr1 (311-353)||(42561535-42561577)
chr1 (294-344)||(50945866-50945916)
chr1 (289-346)||(8209100-8209157)
[»] chr8 (7 HSPs)
chr8 (296-353)||(29283810-29283867)
chr8 (416-562)||(41683172-41683319)
chr8 (299-352)||(11903437-11903490)
chr8 (511-554)||(9067267-9067310)
chr8 (467-562)||(9824858-9824953)
chr8 (309-346)||(34968246-34968283)
chr8 (308-353)||(41372676-41372720)
[»] chr6 (2 HSPs)
chr6 (445-555)||(32318003-32318114)
chr6 (302-353)||(32570254-32570304)
[»] chr4 (8 HSPs)
chr4 (426-486)||(9021788-9021850)
chr4 (295-346)||(37442681-37442732)
chr4 (432-529)||(27990947-27991047)
chr4 (285-353)||(7232570-7232638)
chr4 (285-353)||(17616297-17616364)
chr4 (294-346)||(25156444-25156496)
chr4 (294-344)||(42906299-42906349)
chr4 (312-353)||(27376194-27376235)
[»] chr3 (15 HSPs)
chr3 (296-346)||(1148941-1148991)
chr3 (288-346)||(8845015-8845073)
chr3 (294-348)||(32797432-32797486)
chr3 (440-562)||(37743135-37743257)
chr3 (289-346)||(32758171-32758228)
chr3 (301-346)||(34995332-34995377)
chr3 (285-346)||(53995085-53995146)
chr3 (290-346)||(47410326-47410382)
chr3 (299-346)||(51103003-51103050)
chr3 (294-348)||(36643425-36643479)
chr3 (302-344)||(50098306-50098348)
chr3 (447-551)||(11442658-11442759)
chr3 (312-353)||(33091599-33091640)
chr3 (301-346)||(33365301-33365346)
chr3 (304-353)||(35963932-35963981)
[»] chr7 (9 HSPs)
chr7 (294-346)||(1441741-1441792)
chr7 (301-353)||(11267216-11267268)
chr7 (294-346)||(19063002-19063054)
chr7 (294-345)||(16840681-16840732)
chr7 (308-351)||(28760682-28760725)
chr7 (303-346)||(45883893-45883936)
chr7 (299-353)||(45883773-45883827)
chr7 (293-346)||(7814390-7814443)
chr7 (284-353)||(32676543-32676612)


Alignment Details
Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 175 - 722
Target Start/End: Original strand, 29866607 - 29867151
Alignment:
Q  175 gttctgataggttttgattggttcaacaaaaaggagatgaaaggaaaagaaatgggaggaatttcaattatacacacatacgagcgttcaaacaagcggt 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866607 gttctgataggttttgattggttcaacaaaaaggagatgaaaggaaaagaaatgggaggaatttcaattatacacacatacgagcgttcaaacaagcggt 29866706  T
Q  275 ttccatttgcctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgattacgcattcagacaaatgaaaat 374  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||    
T  29866707 ttccatttgtctgtttttatattgtgctaatgcgtgtaaattatgaacaatagtttttaagaaatt--gattttgattacgcatacagacaaatgaaaat 29866804  T
Q  375 tagaaaaatatcactacaaatctgtgagaaagaactaacaaatgttgtgagcaacccaaatatgcaaaacaaaaaagtaatttatatttgttttagaatt 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29866805 tagaaaaatatcactacaaatctgtgagaaagaactaacaaatgttgtgagcaacccaaatatgcaaaacaaaaaagtaatttatatttgttttagaatt 29866904  T
Q  475 caattttgctttgaaatttcaagatttaacaatcactaaataatgtctatgttaaatattgttttctacatatattattaatgaaactgaannnnnnnnn 574  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             
T  29866905 caattttgctttgcaatttcaagatttaacaatcactaaataatgtctatgttaaatattgttttctacatatattattaatgaaactgaa-tttttttt 29867003  T
Q  575 nnnnnnggtcatgcatcaatggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaaagatattca 674  Q
          | || |||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  29867004 taaaaagttcttgcaccaatggagttgagtctaagaaacggagttcgaccctcacaacttcgcgaatcaatgttcaaactatgacggagaacgatattca 29867103  T
Q  675 tattcagtgtctggcatgcctcaaatcaaactacacatatattaattt 722  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||    
T  29867104 tattcagtatctggcatgtctcaaatcaaactacacatatattaattt 29867151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 175 - 512
Target Start/End: Original strand, 29846380 - 29846704
Alignment:
Q  175 gttctgataggttttgattggttcaacaaaaaggagatgaaaggaaaagaaatgggaggaatttcaattatacacacatacgagcgttcaaacaagcggt 274  Q
    ||||||||||||||||||||||| ||  |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  29846380 gttctgataggttttgattggttaaa--aaaaggagatgaaaggaaaaaaaatggaaggaatttcaattatacacacatacgagcgttcaaacaaacggt 29846477  T
Q  275 ttccatttgcctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgattacgcattcagacaaatgaaaat 374  Q
    ||          | |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  29846478 tt----------gtttttatattgtgctgatgtgtataaattatgaacaatagtttttaagaaattttgattttgattacgcatacacacaaatgaaaat 29846567  T
Q  375 tagaaaaatatcactacaaatctgtgagaaagaactaacaaatgttgtgagcaacccaaatatgcaaaacaaaaaagtaatttatatttgttttagaatt 474  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29846568 tagaaaaatatcactacaaatctgtgagaaagaactaacaaatgttgtgagcaacccaaatatgcaaaacaaaaaagtaatttatatttgttttagaatt 29846667  T
Q  475 caattttgctttgaaatttcaagatttaacaatcacta 512  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  29846668 caattttgctttgcaattt-aagatttaacaatcacta 29846704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 4e-66
Query Start/End: Original strand, 586 - 722
Target Start/End: Original strand, 29846821 - 29846957
Alignment:
Q  586 tgcatcaatggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaaagatattcatattcagtgtc 685  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29846821 tgcatcaatggagttgagtctaagagacggagttcgactctcacaacttcgcgaatcaatgttcaaactatgactgagaacgatattcatattcagtgtc 29846920  T
Q  686 tggcatgcctcaaatcaaactacacatatattaattt 722  Q
    || ||||||||||||||||||||||||||||||||||    
T  29846921 tgacatgcctcaaatcaaactacacatatattaattt 29846957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 858 - 936
Target Start/End: Complemental strand, 8886703 - 8886625
Alignment:
Q  858 gcaaggactcacctcccaatttgccaatatttttggcgcaggagtgtggtggtcttgcagaaattggaattctagctgc 936  Q
    |||||||||||||||||||| | ||||||| || | || |||||||||||||||||| ||||||   ||||||||||||    
T  8886703 gcaaggactcacctcccaatcttccaatatcttcgccgtaggagtgtggtggtcttggagaaatcaaaattctagctgc 8886625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 287 - 340
Target Start/End: Original strand, 27488723 - 27488776
Alignment:
Q  287 gcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaatt 340  Q
    ||||||||||||  ||||||||| ||||||||||||||||||||||| ||||||    
T  27488723 gcttttatattgcactaatgcgtgtaaattatgaacaatagtttttatgaaatt 27488776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 40824134 - 40824079
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagt-ttttaagaaattttgatttt 348  Q
    |||||||||||||||||||||||||||||||| || ||||| ||||||||| ||||    
T  40824134 tattgtgctaatgcgtataaattatgaacaattgtgttttatgaaattttgttttt 40824079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 490 - 556
Target Start/End: Complemental strand, 40156159 - 40156093
Alignment:
Q  490 atttcaagatttaacaatcactaaataatgtctatgttaaatattgttttctacatatattattaat 556  Q
    |||||||| ||| ||||||  |||||||||| ||| ||||||||| ||||| |||||||||||||||    
T  40156159 atttcaaggttttacaatcggtaaataatgtttatattaaatattattttcaacatatattattaat 40156093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 20 - 63
Target Start/End: Original strand, 29846221 - 29846265
Alignment:
Q  20 cgtcaaaaaaa-cttgtttattgtaataatacaaaaaactttttt 63  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||    
T  29846221 cgtcaaaaaaatcttgtttattgtaataatacaaaaatctttttt 29846265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 40693130 - 40693182
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||| |||||| ||||||||| |||||||| |||||| ||||||||||||    
T  40693130 tattgtgttaatgcatataaattacgaacaatattttttatgaaattttgatt 40693182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 3944990 - 3945041
Alignment:
Q  295 attgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||| ||||||| |||||| ||| ||||||||||||||| ||||||||||||    
T  3944990 attgagctaatgtgtataagttacgaacaatagtttttatgaaattttgatt 3945041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 353
Target Start/End: Original strand, 35395007 - 35395065
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||||  || |||||||||||| ||| |||||| |||||||||||||||||||    
T  35395007 tattgtgctaatttgtgtaaattatgaacgata-tttttatgaaattttgattttgatta 35395065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 346
Target Start/End: Original strand, 41863886 - 41863932
Alignment:
Q  300 gctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||||| ||||||||| |||||||| |||||| ||||||||||||    
T  41863886 gctaatgcttataaattacgaacaataatttttatgaaattttgatt 41863932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 302 - 331
Target Start/End: Original strand, 41863143 - 41863172
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttt 331  Q
    ||||||||||||||||||||||||||||||    
T  41863143 taatgcgtataaattatgaacaatagtttt 41863172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 3e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 418 - 565
Target Start/End: Complemental strand, 9491714 - 9491566
Alignment:
Q  418 gttgtgagcaacccaaatatgcaaaac-aaaaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaata 516  Q
    |||||| |||||| ||||||||||||  |||||| |||||||||||||| |||||||||||| || |||||  |||||||| ||| | |||   ||||||    
T  9491714 gttgtgtgcaaccaaaatatgcaaaagtaaaaaaataatttatatttgtgttagaattcaatattactttgttatttcaaggttttaaaattggtaaata 9491615  T
Q  517 atgtctatgttaaatattgttttctacatatattattaatgaaactgaa 565  Q
    |||||||  ||||||||| ||||  ||||||||||||||| ||||||||    
T  9491614 atgtctacattaaatattattttaaacatatattattaattaaactgaa 9491566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 40860021 - 40859969
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| |||||||||||||||||| ||||||||||||| | ||||||||||||    
T  40860021 tattgcgctaatgcgtataaattacgaacaatagttttaatgaaattttgatt 40859969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 32217003 - 32217054
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||||||||| ||||||| |||||| | |||||||||||||||||    
T  32217003 taatgcgtataaattataaacaatattttttatgcaattttgattttgatta 32217054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 35155988 - 35155936
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||| |||||||||||||||||||| | || |||||| ||||||||||||    
T  35155988 tattgtgttaatgcgtataaattatgaatattattttttatgaaattttgatt 35155936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 35469007 - 35468955
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||||||||||||||||||||||||| ||| |||  | ||||||||||||    
T  35469007 tattgtgctaatgcgtataaattatgaactatattttcaatgaaattttgatt 35468955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 511 - 562
Target Start/End: Original strand, 28646452 - 28646503
Alignment:
Q  511 taaataatgtctatgttaaatattgttttctacatatattattaatgaaact 562  Q
    |||||||||| ||| ||||||||| ||||| ||||||||||||||| |||||    
T  28646452 taaataatgtatatattaaatattattttcaacatatattattaattaaact 28646503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 32226306 - 32226357
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||||||||| | ||||| |||||| | |||||||||||||||||    
T  32226306 taatgcgtataaattataagcaatattttttatgcaattttgattttgatta 32226357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 347
Target Start/End: Complemental strand, 33201468 - 33201410
Alignment:
Q  289 ttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattt 347  Q
    |||| ||||| |||||| | ||||||||| ||||||||||||| | |||||||||||||    
T  33201468 ttttttattgcgctaatacatataaattacgaacaatagttttaatgaaattttgattt 33201410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Complemental strand, 27171128 - 27171071
Alignment:
Q  289 ttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||| |||||| ||||| ||||||||||| ||||| ||||||| | ||||||||||||    
T  27171128 ttttttattgtactaatacgtataaattacgaacattagttttcatgaaattttgatt 27171071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 425 - 562
Target Start/End: Original strand, 12685445 - 12685583
Alignment:
Q  425 gcaacccaaatatgcaaaac-aaaaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaataatgtcta 523  Q
    |||||| ||||||||||||  ||||||  ||||||||||||| ||| ||||||||||| |||||  |||||||  |||||||||   |||||||||||||    
T  12685445 gcaaccaaaatatgcaaaattaaaaaaacaatttatatttgtgttacaattcaattttactttgctatttcaatgtttaacaattcataaataatgtcta 12685544  T
Q  524 tgttaaatattgttttctacatatattattaatgaaact 562  Q
    | ||||| ||| || || | ||||||||||||| |||||    
T  12685545 tattaaacattattctcaatatatattattaattaaact 12685583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 298 - 350
Target Start/End: Complemental strand, 1146700 - 1146648
Alignment:
Q  298 gtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttga 350  Q
    ||||||||||||||||||||  ||| ||||||||||  |||||||||||||||    
T  1146700 gtgctaatgcgtataaattaccaacgatagtttttataaaattttgattttga 1146648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 12174493 - 12174533
Alignment:
Q  306 gcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  12174493 gcgtataaattatgaacaatagtttttatcaaattttgatt 12174533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 12294700 - 12294648
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| || ||||||||||||||||||||  ||||||||| ||||||||||||    
T  12294700 tattgcgcaaatgcgtataaattatgaacggtagtttttatgaaattttgatt 12294648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 42470278 - 42470329
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||| |||||||  ||||||| |||||| |||||||||||||||||||    
T  42470278 taatgcgtttaaattacaaacaataatttttatgaaattttgattttgatta 42470329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 300 - 342
Target Start/End: Original strand, 33928082 - 33928124
Alignment:
Q  300 gctaatgcgtataaattatgaacaatagtttttaagaaatttt 342  Q
    |||||| ||||||||||||||||||| ||||||| ||||||||    
T  33928082 gctaatacgtataaattatgaacaattgtttttatgaaatttt 33928124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 353
Target Start/End: Original strand, 42561535 - 42561577
Alignment:
Q  311 taaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||||||||||  |||||| |||||||||||||||||||    
T  42561535 taaattatgaacaatgttttttatgaaattttgattttgatta 42561577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Complemental strand, 50945916 - 50945866
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttga 344  Q
    ||||||| |||||||||||| ||| |||||||||||||||  |||||||||    
T  50945916 tattgtgttaatgcgtataacttaagaacaatagtttttataaaattttga 50945866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 8209100 - 8209157
Alignment:
Q  289 ttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||| ||||||| ||| || |||||||||| || |||| |||||||||||||||||||    
T  8209100 ttttttattgtgataacgcatataaattatcaataataatttttaagaaattttgatt 8209157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 296 - 353
Target Start/End: Original strand, 29283810 - 29283867
Alignment:
Q  296 ttgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||||||| |||||||||||||| |||||||||| |||||||||||||||||||    
T  29283810 ttgtgctaatgcttataaattatgaactatagtttttatgaaattttgattttgatta 29283867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000005
Query Start/End: Original strand, 416 - 562
Target Start/End: Original strand, 41683172 - 41683319
Alignment:
Q  416 atgttgtgagcaacccaaatatgcaaaac-aaaaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaa 514  Q
    |||||||| |||||| | ||||||||||  ||||||||||||| |||  || |||||||||||| || |  |   |||||||| ||||||  | | ||||    
T  41683172 atgttgtgtgcaaccaacatatgcaaaagtaaaaaagtaatttttatccgtgttagaattcaatattacggttctatttcaaggtttaacttttagtaaa 41683271  T
Q  515 taatgtctatgttaaatattgttttctacatatattattaatgaaact 562  Q
    |||||||||| ||||||||| ||||| ||| ||||||||||| |||||    
T  41683272 taatgtctatattaaatattattttcaacaaatattattaattaaact 41683319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 299 - 352
Target Start/End: Complemental strand, 11903490 - 11903437
Alignment:
Q  299 tgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatt 352  Q
    |||||||||||||||||||||||||| ||||||   ||||||||||||||||||    
T  11903490 tgctaatgcgtataaattatgaacaaaagttttcgtgaaattttgattttgatt 11903437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 511 - 554
Target Start/End: Original strand, 9067267 - 9067310
Alignment:
Q  511 taaataatgtctatgttaaatattgttttctacatatattatta 554  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||    
T  9067267 taaataatatctatattaaatattgttttcaacatatattatta 9067310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 467 - 562
Target Start/End: Complemental strand, 9824953 - 9824858
Alignment:
Q  467 ttagaattcaattttgctttgaaatttcaagatttaacaatcactaaataatgtctatgttaaatattgttttctacatatattattaatgaaact 562  Q
    |||||||||| |||  |||||  |||| ||| |||||||||   ||||||||||| || || |||||| ||||| ||||||||||||||| |||||    
T  9824953 ttagaattcagtttaactttgttattttaaggtttaacaattggtaaataatgtcaatatttaatattattttcaacatatattattaattaaact 9824858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 309 - 346
Target Start/End: Original strand, 34968246 - 34968283
Alignment:
Q  309 tataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||||||  ||||||||||||||||||||||||||    
T  34968246 tataaattatatacaatagtttttaagaaattttgatt 34968283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 308 - 353
Target Start/End: Complemental strand, 41372720 - 41372676
Alignment:
Q  308 gtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||||||||||||||| || | |||||||||||||||||    
T  41372720 gtataaattatgaacaatagtttatatg-aattttgattttgatta 41372676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 445 - 555
Target Start/End: Original strand, 32318003 - 32318114
Alignment:
Q  445 aaaaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaataatgtctatgttaaatattgt-tttctac 543  Q
    |||||||||||||||||||||||||||||||||| || |||||  |||||||| ||||||  |   |||||||||||||| ||||| ||| | |||  ||    
T  32318003 aaaaaagtaatttatatttgttttagaattcaatattactttgctatttcaagttttaacggttgataaataatgtctatattaaaaattatatttggac 32318102  T
Q  544 atatattattaa 555  Q
    ||||||||||||    
T  32318103 atatattattaa 32318114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 353
Target Start/End: Original strand, 32570254 - 32570304
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||| |||||    
T  32570254 taatgcgtataaattacgaaca-tagtttttatgaaattttgatttagatta 32570304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.0000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 426 - 486
Target Start/End: Original strand, 9021788 - 9021850
Alignment:
Q  426 caacccaaatatgcaaaac--aaaaaagtaatttatatttgttttagaattcaattttgcttt 486  Q
    ||||| ||||||||||||   ||||||||||||||||||||| |||||||||||| |||||||    
T  9021788 caaccaaaatatgcaaaagtaaaaaaagtaatttatatttgtgttagaattcaatattgcttt 9021850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 346
Target Start/End: Original strand, 37442681 - 37442732
Alignment:
Q  295 attgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||||||||||||||||||| ||||||||| |||||  ||||||||||||    
T  37442681 attgtgctaatgcgtataaattttgaacaataatttttctgaaattttgatt 37442732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 432 - 529
Target Start/End: Complemental strand, 27991047 - 27990947
Alignment:
Q  432 aaatatgcaaaac-aaaaaagtaatttatatttgttttagaattca--attttgctttgaaatttcaagatttaacaatcactaaataatgtctatgtta 528  Q
    ||||||||||||  ||||||||||||||||||||| ||||||||||  ||| | ||| |  |||||||| ||||| ||| | |||||||||||||| |||    
T  27991047 aaatatgcaaaagtaaaaaagtaatttatatttgtgttagaattcaatattatacttggctatttcaaggtttaagaataagtaaataatgtctatatta 27990948  T
Q  529 a 529  Q
    |    
T  27990947 a 27990947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 353
Target Start/End: Complemental strand, 7232638 - 7232570
Alignment:
Q  285 ctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||| ||||| | |||||||||||||||||||||  ||||||||  ||||||| ||||| |||||    
T  7232638 ctgcttttttattgcggtaatgcgtataaattatgaacggtagtttttgtgaaatttagatttagatta 7232570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 285 - 353
Target Start/End: Original strand, 17616297 - 17616364
Alignment:
Q  285 ctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||||| |||||| |||||||||||| ||||||||  ||| ||||  ||||||||||||||||||||    
T  17616297 ctgcttttttattgtcctaatgcgtatatattatgaaagata-ttttatagaaattttgattttgatta 17616364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Original strand, 25156444 - 25156496
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||| ||||||||| |||||||||||||||||||||||||   ||||||||||    
T  25156444 tattatgctaatgcatataaattatgaacaatagtttttatagaattttgatt 25156496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 344
Target Start/End: Original strand, 42906299 - 42906349
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttga 344  Q
    ||||| |||||||| |||||||||  |||||||||||||| ||||||||||    
T  42906299 tattgcgctaatgcatataaattacaaacaatagtttttatgaaattttga 42906349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 353
Target Start/End: Original strand, 27376194 - 27376235
Alignment:
Q  312 aaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||| ||| |||||| |||||||||||||||||||    
T  27376194 aaattatgaacgatattttttatgaaattttgattttgatta 27376235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 1148991 - 1148941
Alignment:
Q  296 ttgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| |||||||||||||| | ||||||||||||||| ||||||||||||    
T  1148991 ttgtgttaatgcgtataaatcacgaacaatagtttttatgaaattttgatt 1148941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 288 - 346
Target Start/End: Original strand, 8845015 - 8845073
Alignment:
Q  288 cttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| |||||  ||||||| |||||||||||||| |||||||||| ||||||||||||    
T  8845015 cttttttattgcactaatgcatataaattatgaacgatagtttttatgaaattttgatt 8845073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 294 - 348
Target Start/End: Complemental strand, 32797486 - 32797432
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatttt 348  Q
    ||||||||||||| |||||||||| |||||||| |||||| |||||||| |||||    
T  32797486 tattgtgctaatgtgtataaattacgaacaataatttttatgaaattttaatttt 32797432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 440 - 562
Target Start/End: Original strand, 37743135 - 37743257
Alignment:
Q  440 aaaacaaaaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaataatgtctatgttaaatattgtttt 539  Q
    |||| ||||| ||||| ||||||||| |||||||||||| ||  ||||  |||||||| ||||| |||   | |||||||||||| |||||| || ||||    
T  37743135 aaaataaaaaggtaatatatatttgtcttagaattcaatattagtttgctatttcaaggtttaataattgattaataatgtctatattaaatgttatttt 37743234  T
Q  540 ctacatatattattaatgaaact 562  Q
      ||||||||||| ||| |||||    
T  37743235 tgacatatattataaattaaact 37743257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 346
Target Start/End: Original strand, 32758171 - 32758228
Alignment:
Q  289 ttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||| ||||| |||||||| |||||||||| ||||||| |||||| ||||||||||||    
T  32758171 ttttttattgcgctaatgcatataaattataaacaatattttttatgaaattttgatt 32758228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 34995332 - 34995377
Alignment:
Q  301 ctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||    
T  34995332 ctaatgggtataaattatgaacaatagcttttatgaaattttgatt 34995377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 346
Target Start/End: Original strand, 53995085 - 53995146
Alignment:
Q  285 ctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| || ||||| ||||||||||||||||||  |||| ||||||||| ||||||||||||    
T  53995085 ctgctcttctattgcgctaatgcgtataaattacaaacagtagtttttatgaaattttgatt 53995146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 290 - 346
Target Start/End: Original strand, 47410326 - 47410382
Alignment:
Q  290 tttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||||| | ||||| |||||||||| |||||||| |||||| ||||||||||||    
T  47410326 tttatattgcgttaatgtgtataaattacgaacaataatttttatgaaattttgatt 47410382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 346
Target Start/End: Original strand, 51103003 - 51103050
Alignment:
Q  299 tgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||||| ||||||||||||||||||| ||||||  |||||||||||    
T  51103003 tgctaatgtgtataaattatgaacaataatttttataaaattttgatt 51103050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 348
Target Start/End: Original strand, 36643425 - 36643479
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatttt 348  Q
    |||||||||||| |||||||||||  || |||| |||||| ||||||||||||||    
T  36643425 tattgtgctaattcgtataaattaataataatattttttatgaaattttgatttt 36643479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 344
Target Start/End: Original strand, 50098306 - 50098348
Alignment:
Q  302 taatgcgtataaattatgaacaatagtttttaagaaattttga 344  Q
    ||||||||||||||||| ||||||||||| || ||||||||||    
T  50098306 taatgcgtataaattataaacaatagtttatatgaaattttga 50098348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 447 - 551
Target Start/End: Complemental strand, 11442759 - 11442658
Alignment:
Q  447 aaaagtaatttatatttgttttagaattcaattttgctttgaaatttcaagatttaacaatcactaaataatgtctatgttaaatattgttttctacata 546  Q
    |||| |||||||||||||||| ||| |||||| ||  |||||  ||| ||||| ||| ||| | ||||||||||||||  |||||||| ||||| |||||    
T  11442759 aaaaataatttatatttgtttcagagttcaatattattttga--ttttaagatctaataat-agtaaataatgtctatactaaatattattttcaacata 11442663  T
Q  547 tatta 551  Q
    |||||    
T  11442662 tatta 11442658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 353
Target Start/End: Complemental strand, 33091640 - 33091599
Alignment:
Q  312 aaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||||||  ||||||||||||||| ||||||||||    
T  33091640 aaattatgaacaatgttttttaagaaattttaattttgatta 33091599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 301 - 346
Target Start/End: Original strand, 33365301 - 33365346
Alignment:
Q  301 ctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||| ||||||||| ||||| ||||||||| ||||||||||||    
T  33365301 ctaatgcttataaattacgaacattagtttttatgaaattttgatt 33365346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 304 - 353
Target Start/End: Complemental strand, 35963981 - 35963932
Alignment:
Q  304 atgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||| ||||||||| ||| ||||||||| | |||||||||||||||||||    
T  35963981 atgcatataaattacgaataatagttttaatgaaattttgattttgatta 35963932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 1441792 - 1441741
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||| |||||||||||||||||| ||||||||| ||||| ||||||||||||    
T  1441792 tattgcgctaatgcgtataaattacgaacaatag-ttttatgaaattttgatt 1441741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 301 - 353
Target Start/End: Original strand, 11267216 - 11267268
Alignment:
Q  301 ctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    ||||||||||| ||||||||| ||||||||||  ||||||| |||||||||||    
T  11267216 ctaatgcgtatgaattatgaagaatagtttttgtgaaatttagattttgatta 11267268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 19063054 - 19063002
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||||||||||| ||||||||||||| | || |||||| ||||||||||||    
T  19063054 tattgtgctaatgcatataaattatgaagagtaatttttatgaaattttgatt 19063002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 345
Target Start/End: Complemental strand, 16840732 - 16840681
Alignment:
Q  294 tattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgat 345  Q
    ||||| ||||||  |||||||||| ||||||||||||||| |||||||||||    
T  16840732 tattgcgctaatatgtataaattacgaacaatagtttttatgaaattttgat 16840681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 308 - 351
Target Start/End: Complemental strand, 28760725 - 28760682
Alignment:
Q  308 gtataaattatgaacaatagtttttaagaaattttgattttgat 351  Q
    ||||||||||||||| |||||||||| | |||||||||||||||    
T  28760725 gtataaattatgaacgatagtttttatgcaattttgattttgat 28760682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 346
Target Start/End: Original strand, 45883893 - 45883936
Alignment:
Q  303 aatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    ||||||||||||| |||||||||| |||||| ||||||||||||    
T  45883893 aatgcgtataaatcatgaacaatattttttatgaaattttgatt 45883936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 353
Target Start/End: Original strand, 45883773 - 45883827
Alignment:
Q  299 tgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||||| | |||||||||||||||| ||||||||| | |||||||||||| ||||    
T  45883773 tgctaaagtgtataaattatgaacagtagtttttatgcaattttgatttttatta 45883827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 293 - 346
Target Start/End: Complemental strand, 7814443 - 7814390
Alignment:
Q  293 atattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgatt 346  Q
    |||||| | |||||||||||||| |||||||||| | |||| ||||||||||||    
T  7814443 atattgcggtaatgcgtataaatcatgaacaataatatttatgaaattttgatt 7814390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 284 - 353
Target Start/End: Complemental strand, 32676612 - 32676543
Alignment:
Q  284 cctgcttttatattgtgctaatgcgtataaattatgaacaatagtttttaagaaattttgattttgatta 353  Q
    |||| |||||||||||| |||||  ||||||||||||| | || | ||||  ||||||||||||||||||    
T  32676612 cctgtttttatattgtgttaatgtatataaattatgaatagtaatatttataaaattttgattttgatta 32676543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University