View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_10 (Length: 545)
Name: NF11901_low_10
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_10 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Original strand, 35330686 - 35331216
Alignment:
| Q |
17 |
acttactgctattgctgacaggataaagatgttcctgcagaccaccattcgccataaattcatacaccagcagcttatgattatgatcagagcagtatcc |
116 |
Q |
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| T |
35330686 |
acttactgctattgctgacaggataaagatgttcctgcagaccaccattcgccataaattcatacaccagcagcttatgattatgatcagagcagtatcc |
35330785 |
T |
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| Q |
117 |
aagcagtgcaagcaaatacggagaatgcaaccgacttagcaattccacctacaatgagatgcaattaatcaaccaattcgcaaaataaaatgtcttccaa |
216 |
Q |
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| T |
35330786 |
aagcaatgcaagcaaatacggagaatgcaaccgacttagcaattccacctacaatgagatgcaattaatcaaccaattcgcaaaataaaatgtcttccaa |
35330885 |
T |
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| Q |
217 |
ggtcactgatctctatcgaattgattgacttaatgccnnnnnnnnnnn--tcattttgatccatattctacaaattttataacaaggcaaatgaagtgca |
314 |
Q |
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| T |
35330886 |
ggtcaatgatctctatcgaattcattgacttaatgccaaaaaaaaaaaaatcattatgatccatattctacagattttataacaaggcaaatgaagtgca |
35330985 |
T |
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| Q |
315 |
tatgaaaatgtacaaacctcaactttaaactcttcttctccttgctttcctgcctgatccattaatttaatcgcaaccttccttccatcgttgagcactc |
414 |
Q |
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| T |
35330986 |
tatgaaaatgtacaaacctcaactttaaactcttcttctccttgctttcctgcctgatccattaatttaatcgcaaccttccttccatcgttgagcactc |
35331085 |
T |
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| Q |
415 |
cacggtaaacaagtccaaatccaccatgaccgactatatttgacttgctgaaacctccagtagcagaatgcagctgcttgaaagtgaacaccttaagtcc |
514 |
Q |
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| T |
35331086 |
cacggtaaacaagtccaaatccaccatgaccgactatatttgacttgctgaaacctccagtagcagaatgcagctgcttgaaagtgaacaccttaagtcc |
35331185 |
T |
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| Q |
515 |
tttctcagcaacaacttgtaggtttgcaaaa |
545 |
Q |
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| T |
35331186 |
tttctcagcaacaacttgtaggtttgcaaaa |
35331216 |
T |
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