View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_12 (Length: 511)
Name: NF11901_low_12
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 48595893 - 48596362
Alignment:
| Q |
18 |
agagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactgaatcgacttgtgattccaaagcaacacgcagagaagtacttccct |
117 |
Q |
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| T |
48595893 |
agagaaagagcatatgtttgacaaagtggtgacacctagtgacgtagggaaactaaatcgacttgtgattccaaagcaacacgcagagaagtacttccct |
48595992 |
T |
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| Q |
118 |
ttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccaga |
217 |
Q |
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| T |
48595993 |
ttggattcttctaccaacgagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccaga |
48596092 |
T |
|
| Q |
218 |
gttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgtatcattccaccgtggacgtgctgaattgcacag |
317 |
Q |
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| T |
48596093 |
gttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgtatcattccaccgtggacgtgctgaattgcacag |
48596192 |
T |
|
| Q |
318 |
acacaggttgtacatagattggaggccaagggctcattctcagtactctcatcatcaccaccagtacctcatccctcaatannnnnnnnnnnnnnnnnnn |
417 |
Q |
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| T |
48596193 |
acacaggttgtacatagattggaggccaagggctcattctcagtactctcatcatcaccaccagtacctcatccctcaata------tcctcctcctcct |
48596286 |
T |
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| Q |
418 |
nnntcactgcctttctatcttcctcccaatcatcactatcactactcatcatatgctgctactgctagatcattat |
493 |
Q |
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| T |
48596287 |
ccttcactgcctttctatcttcctcccaatcatcactatcactactcatcatatgctgctactgctagatcattat |
48596362 |
T |
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Target: chr8 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 136 - 284
Target Start/End: Complemental strand, 8775157 - 8775009
Alignment:
| Q |
136 |
gagaaagggcttctcctaaattttgaagatcgaaatggtaagatgtggcggttcaggtattcttattggaacagtagccagagttatgtgatgacaaaag |
235 |
Q |
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| T |
8775157 |
gagaaaggtcttcttctgaattttgaagatagaaatggaaaattgtggagatttagatactcttattggaacagtagccaaagctatgttatgacaaaag |
8775058 |
T |
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| Q |
236 |
gttggagccgtttcgttaaggagaagaaacttgatgctggtgacattgt |
284 |
Q |
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| T |
8775057 |
gttggagccgttttgttaaagagaaaaaacttgatgctggcgacattgt |
8775009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 193 - 263
Target Start/End: Complemental strand, 41952166 - 41952096
Alignment:
| Q |
193 |
tattcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaa |
263 |
Q |
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| T |
41952166 |
tattcttattggaatagtagccagagttatgttttgaccaaaggatggagccggttcgttaaggagaagaa |
41952096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 196 - 263
Target Start/End: Original strand, 22190360 - 22190427
Alignment:
| Q |
196 |
tcttattggaacagtagccagagttatgtgatgacaaaaggttggagccgtttcgttaaggagaagaa |
263 |
Q |
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||||||||||||||||| || ||||| || | |||||||| |||||||| ||||||||||||||||| |
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| T |
22190360 |
tcttattggaacagtagtcaaagttacgttctaacaaaaggatggagccggttcgttaaggagaagaa |
22190427 |
T |
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