View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_15 (Length: 479)

Name: NF11901_low_15
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_15
NF11901_low_15
[»] chr4 (27 HSPs)
chr4 (25-462)||(55614117-55614542)
chr4 (18-189)||(40693242-40693414)
chr4 (18-107)||(38990912-38991001)
chr4 (18-127)||(53511289-53511398)
chr4 (21-137)||(47985944-47986060)
chr4 (21-189)||(52919688-52919857)
chr4 (18-118)||(51888882-51888982)
chr4 (18-118)||(13721119-13721219)
chr4 (18-70)||(16684506-16684558)
chr4 (18-101)||(45659774-45659857)
chr4 (22-70)||(44107959-44108007)
chr4 (18-50)||(4047976-4048008)
chr4 (18-50)||(16451774-16451806)
chr4 (18-50)||(38218535-38218567)
chr4 (19-57)||(53269236-53269274)
chr4 (18-47)||(16023714-16023743)
chr4 (18-55)||(17647030-17647067)
chr4 (18-47)||(28781038-28781067)
chr4 (18-47)||(30003452-30003481)
chr4 (18-47)||(43842145-43842174)
chr4 (18-47)||(45029288-45029317)
chr4 (18-47)||(51538486-51538515)
chr4 (18-47)||(56463909-56463938)
chr4 (18-50)||(4190136-4190168)
chr4 (18-50)||(45924442-45924474)
chr4 (18-50)||(49374162-49374194)
chr4 (18-50)||(52417201-52417233)
[»] chr3 (24 HSPs)
chr3 (25-462)||(16480831-16481256)
chr3 (18-187)||(49440529-49440699)
chr3 (18-188)||(33186507-33186678)
chr3 (18-123)||(49327575-49327680)
chr3 (18-187)||(21450422-21450592)
chr3 (18-190)||(47374987-47375160)
chr3 (18-120)||(9126802-9126904)
chr3 (18-120)||(9134909-9135011)
chr3 (19-121)||(48061947-48062049)
chr3 (20-76)||(8486770-8486826)
chr3 (18-188)||(44207850-44208019)
chr3 (18-135)||(9116901-9117016)
chr3 (18-61)||(3733787-3733830)
chr3 (18-61)||(26982586-26982629)
chr3 (19-60)||(53393779-53393820)
chr3 (18-50)||(6936314-6936346)
chr3 (18-50)||(41174657-41174689)
chr3 (18-47)||(10509489-10509518)
chr3 (18-47)||(36402977-36403006)
chr3 (18-47)||(41193984-41194013)
chr3 (18-47)||(47646756-47646785)
chr3 (18-50)||(149165-149197)
chr3 (18-46)||(2182926-2182954)
chr3 (18-50)||(39353143-39353175)
[»] chr5 (19 HSPs)
chr5 (18-190)||(1711478-1711651)
chr5 (18-188)||(5344001-5344172)
chr5 (21-137)||(24856177-24856293)
chr5 (18-112)||(32746620-32746714)
chr5 (18-189)||(6432671-6432842)
chr5 (27-188)||(29047293-29047455)
chr5 (18-63)||(27948417-27948462)
chr5 (18-50)||(25977393-25977425)
chr5 (18-50)||(27114142-27114174)
chr5 (18-50)||(37030516-37030548)
chr5 (18-47)||(12784995-12785024)
chr5 (18-47)||(16513861-16513890)
chr5 (18-47)||(18808820-18808849)
chr5 (18-51)||(38984203-38984236)
chr5 (18-50)||(2606249-2606281)
chr5 (18-50)||(8734532-8734564)
chr5 (18-50)||(9715575-9715607)
chr5 (19-47)||(12723512-12723540)
chr5 (22-50)||(38679724-38679752)
[»] chr7 (13 HSPs)
chr7 (19-194)||(38257695-38257871)
chr7 (19-191)||(26791695-26791868)
chr7 (18-192)||(15032803-15032978)
chr7 (18-135)||(37998426-37998543)
chr7 (18-188)||(7255661-7255832)
chr7 (18-189)||(108405-108576)
chr7 (25-120)||(43749460-43749555)
chr7 (18-137)||(35585322-35585441)
chr7 (18-69)||(29332542-29332593)
chr7 (23-70)||(29739466-29739513)
chr7 (19-50)||(25529372-25529403)
chr7 (18-50)||(43270100-43270132)
chr7 (18-50)||(43458025-43458057)
[»] chr8 (16 HSPs)
chr8 (21-187)||(11991-12158)
chr8 (18-138)||(24830509-24830628)
chr8 (19-187)||(23421212-23421381)
chr8 (21-70)||(42190369-42190418)
chr8 (18-50)||(23144370-23144402)
chr8 (18-49)||(4258974-4259005)
chr8 (16-50)||(627218-627252)
chr8 (87-184)||(42132203-42132301)
chr8 (21-50)||(586676-586705)
chr8 (18-50)||(6347139-6347171)
chr8 (18-50)||(8240255-8240287)
chr8 (18-50)||(13546451-13546483)
chr8 (18-50)||(13677990-13678022)
chr8 (18-50)||(20091405-20091437)
chr8 (18-50)||(29544242-29544274)
chr8 (18-50)||(32337651-32337683)
[»] chr1 (23 HSPs)
chr1 (18-194)||(22335163-22335340)
chr1 (21-137)||(3475530-3475646)
chr1 (18-188)||(12525167-12525337)
chr1 (18-137)||(18272023-18272142)
chr1 (18-137)||(18276677-18276796)
chr1 (18-136)||(10313351-10313469)
chr1 (18-137)||(39597967-39598086)
chr1 (18-135)||(5750055-5750172)
chr1 (31-120)||(29946959-29947048)
chr1 (27-137)||(14270207-14270315)
chr1 (18-68)||(7199738-7199788)
chr1 (18-80)||(10223429-10223491)
chr1 (21-70)||(6605872-6605920)
chr1 (18-47)||(14587611-14587640)
chr1 (21-70)||(29250521-29250570)
chr1 (18-47)||(33801203-33801232)
chr1 (18-47)||(37952141-37952170)
chr1 (18-50)||(12700811-12700843)
chr1 (19-51)||(22817737-22817769)
chr1 (18-46)||(27216646-27216674)
chr1 (18-50)||(38860520-38860552)
chr1 (18-50)||(50262189-50262221)
chr1 (18-46)||(52632619-52632647)
[»] chr2 (15 HSPs)
chr2 (21-188)||(5464646-5464814)
chr2 (18-162)||(43333545-43333690)
chr2 (21-137)||(41961449-41961564)
chr2 (18-101)||(15113603-15113686)
chr2 (18-63)||(5939339-5939384)
chr2 (18-59)||(34948315-34948356)
chr2 (18-63)||(18963174-18963219)
chr2 (18-69)||(24168333-24168382)
chr2 (18-61)||(15257385-15257428)
chr2 (22-63)||(34906167-34906207)
chr2 (90-187)||(13278394-13278492)
chr2 (18-47)||(30490948-30490977)
chr2 (18-47)||(38707482-38707511)
chr2 (18-50)||(7943004-7943036)
chr2 (18-50)||(13278537-13278569)
[»] chr6 (6 HSPs)
chr6 (18-192)||(29435796-29435971)
chr6 (18-191)||(480018-480191)
chr6 (18-137)||(34949286-34949405)
chr6 (18-189)||(13036593-13036765)
chr6 (18-70)||(12305343-12305395)
chr6 (18-50)||(9305225-9305257)
[»] scaffold0168 (1 HSPs)
scaffold0168 (18-70)||(12020-12072)
[»] scaffold1301 (1 HSPs)
scaffold1301 (18-47)||(1502-1531)


Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 462
Target Start/End: Original strand, 55614117 - 55614542
Alignment:
Q  25 ccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatccagat 124  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||| ||||  |||||||||||  ||     
T  55614117 ccttgacatcaaagaaagacacaaaatatttatatcgtagttgtccggattacatattccataaacactaacaatctggtccagattacgtaatctggac 55614216  T
Q  125 cagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaattttggtcctcatgcagtcatgcttgactggt 223  Q
    ||| |||||||||  | |||||||| | ||||||||||||||| |  |||||||| ||||||||||||||||||||||||||||||||                
T  55614217 caggggtatttatggaatttttacaaggcgcgcgagaagacaacagggtggaaaa-gtaatagtctaattttggtcctcatgcagtca------------ 55614303  T
Q  224 ggtcatgcttgactggtgggggacagccacccctttggaccagtgtttataattcaagatccattcacgagtatggttggagagtcctattttgagtttt 323  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55614304 -----tgcttgactggtgggggacagccacccctttggaccagtgtttataattcaagatccattcacgagtatggttggagagtcctattttgagtttt 55614398  T
Q  324 ttagttgctataaattactatataattaaaactaaaaagtatattccggtggaaagttcatgcatgaagttctagtttataatataaaaaggacgggaga 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55614399 ttagttgctataaattactatataattaaaactaaaaagtatattctggtggaaagttcatgcatgaagttctagtttataatataaaaaggacgggaga 55614498  T
Q  424 tgg-----tattttatttttatgattggcgttcacgtctacatt 462  Q
    |||     ||||||||||||||||||||||||||||||||||||    
T  55614499 tggtattttattttatttttatgattggcgttcacgtctacatt 55614542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 40693242 - 40693414
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  40693242 cagagacctttgacatcaaggaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaa 40693341  T
Q  118 tccagatcagaggtatttataaattttttac-agacgcgcgagaagacaatattgtggaaaaagtaatagtct 189  Q
    ||| || |||||||||||||  | ||||||| || ||| ||||||| ||| |  |||| |||| |||||||||    
T  40693342 tccggaccagaggtatttatggaatttttacaaggcgcacgagaaggcaacaaggtgggaaaaataatagtct 40693414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 38990912 - 38991001
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccg 107  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||| |||||||||||| ||| ||||||| |||||    
T  38990912 cagagacccttgacatcaaagaaagacacaaaatattcatattgtatttgtccgaattatatattccataaatactaacaatctggtccg 38991001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 53511398 - 53511289
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||| | |||||||||| |||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  53511398 cagagacccttgacatcaaagaaaaatacaaaatattaatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaa 53511299  T
Q  118 tccagatcag 127  Q
    ||||||||||    
T  53511298 tccagatcag 53511289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 47985944 - 47986060
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||| |||||||  || |||| ||||||| ||||| ||||||||||||    
T  47985944 agacccttgacatcaaagaaagacacaaaatattcatattgtatttgtccggattatatattccggaagcactaacaatctggtccggattacgtaatcc 47986043  T
Q  121 agatcagaggtatttat 137  Q
     || ||| |||||||||    
T  47986044 ggaccaggggtatttat 47986060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 52919688 - 52919857
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    |||||||| |||| ||||||||||||||||||||||||||||| ||||||  |||| ||||||| |||||| | |||||||  |||| |||| ||||||     
T  52919688 agacccttaacattaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccttaaacaataacaatctgatccggattatgtaatca 52919787  T
Q  121 agatcagaggtatttataaattttttacaga-cgcgcgagaagacaatattgtggaaaaagtaatagtct 189  Q
    ||| ||||| |||||||| | ||||| |||| | ||||||||| ||| |  ||| ||||| |||||||||    
T  52919788 agaccagagatatttatagaatttttgcagagcacgcgagaaggcaacagagtgaaaaaaataatagtct 52919857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 51888982 - 51888882
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  51888982 cagagaccattgacatcaaagaaagacaaaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctcgtccggattacgtaa 51888883  T
Q  118 t 118  Q
    |    
T  51888882 t 51888882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 13721219 - 13721119
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||   |||| |||||||  ||||||| ||||||| ||  | |||||||||    
T  13721219 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtctggattatatattccggaaacactaacaatctggtttggattacgtaa 13721120  T
Q  118 t 118  Q
    |    
T  13721119 t 13721119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 16684506 - 16684558
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  16684506 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtcc 16684558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 45659774 - 45659857
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatct 101  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| |||||   |||| |||||||  ||||||| |||||||    
T  45659774 cagagacccttgacatcaaagaaagacacaaaatattcatagcgtatttgtctggattatatattccgaaaacactaacaatct 45659857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 44108007 - 44107959
Alignment:
Q  22 gacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    ||||||| |||||||||||||| ||||||||||||||||||| ||||||    
T  44108007 gacccttaacatcaaagaaagatacaaaatattcatatcgtatttgtcc 44107959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 4048008 - 4047976
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  4048008 cagagacccttgacatcaaagaaagacacaaaa 4047976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 16451806 - 16451774
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  16451806 cagagacccttgacatcaaagaaagacacaaaa 16451774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 38218535 - 38218567
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  38218535 cagagacccttgacatcaaagaaagacacaaaa 38218567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 53269274 - 53269236
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcat 57  Q
    ||||||| |||||||||||||||||||||| ||||||||    
T  53269274 agagaccattgacatcaaagaaagacacaagatattcat 53269236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 16023743 - 16023714
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  16023743 cagagacccttgacatcaaagaaagacaca 16023714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 17647067 - 17647030
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattc 55  Q
    |||||||||||||||| ||||||||||||| |||||||    
T  17647067 cagagacccttgacattaaagaaagacacataatattc 17647030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 28781038 - 28781067
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  28781038 cagagacccttgacatcaaagaaagacaca 28781067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 30003481 - 30003452
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  30003481 cagagacccttgacatcaaagaaagacaca 30003452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 43842145 - 43842174
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  43842145 cagagacccttgacatcaaagaaagacaca 43842174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 45029288 - 45029317
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  45029288 cagagacccttgacatcaaagaaagacaca 45029317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 51538515 - 51538486
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  51538515 cagagacccttgacatcaaagaaagacaca 51538486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 56463909 - 56463938
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  56463909 cagagacccttgacatcaaagaaagacaca 56463938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 4190136 - 4190168
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||| |||||||||||||||||||||||    
T  4190136 cagagacccatgacatcaaagaaagacacaaaa 4190168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 45924474 - 45924442
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  45924474 cagagaccattgacatcaaagaaagacacaaaa 45924442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 49374194 - 49374162
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||| |||||||||||||||||||||||||    
T  49374194 cagagactcttgacatcaaagaaagacacaaaa 49374162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 52417201 - 52417233
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  52417201 cagagacccttgacatcaaagaaagacataaaa 52417233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 25 - 462
Target Start/End: Complemental strand, 16481256 - 16480831
Alignment:
Q  25 ccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatccagat 124  Q
    |||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||| ||||||| ||||  |||||||||||  ||     
T  16481256 ccttgacatcaaagaaagacacaaaatatttatatcgtagttgtccggattacatattccataaacactaacaatctggtccagattacgtaatctggac 16481157  T
Q  125 cagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaattttggtcctcatgcagtcatgcttgactggt 223  Q
    ||| |||||||||  | |||||||| | ||||||||||||||| |  |||||||| |||||||||||||||||||||||||||||||||||||||         
T  16481156 caggggtatttatggaatttttacaaggcgcgcgagaagacaacagggtggaaaa-gtaatagtctaattttggtcctcatgcagtcatgcttga----- 16481063  T
Q  224 ggtcatgcttgactggtgggggacagccacccctttggaccagtgtttataattcaagatccattcacgagtatggttggagagtcctattttgagtttt 323  Q
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16481062 ------------ctggtgggggacagccacccctttggaccagtgtttataattcaagatccattcacgagtatggttggagagtcctattttgagtttt 16480975  T
Q  324 ttagttgctataaattactatataattaaaactaaaaagtatattccggtggaaagttcatgcatgaagttctagtttataatataaaaaggacgggaga 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16480974 ttagttgctataaattactatataattaaaactaaaaagtatattctggtggaaagttcatgcatgaagttctagtttataatataaaaaggacgggaga 16480875  T
Q  424 tggtatttta-----tttttatgattggcgttcacgtctacatt 462  Q
    ||||||||||     |||||||||||||||||||||||||||||    
T  16480874 tggtattttattttatttttatgattggcgttcacgtctacatt 16480831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 49440529 - 49440699
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  | ||||| ||||||| ||||| |||||||||    
T  49440529 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggatacactaacaatctggtccggattacgtaa 49440628  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagt 187  Q
    ||| || ||||||||||||| || ||||| || | ||||||||||| ||| |  |||||||||||||||||    
T  49440629 tccggaccagaggtatttatgaaatttttgcagggcgcgcgagaaggcaacagggtggaaaaagtaatagt 49440699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 33186678 - 33186507
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| |||| |  |||| |||||||  ||||||||||||||| || || |||||||||    
T  33186678 cagagacccttgatatcaaagaaagacacaaaatattcatatcgtatttgttcggattatatattccggaaacactgacaatctggttcggattacgtaa 33186579  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    |||||||||| | |||||||| | ||||| || | ||||||||||| ||| |  ||||||||| ||||||||    
T  33186578 tccagatcagggatatttatagaatttttgcagggcgcgcgagaaggcaacagggtggaaaaaataatagtc 33186507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 49327575 - 49327680
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||  ||||| | ||||||| ||||| |||||||||    
T  49327575 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccgaattatatattccgaaaacaataacaatctggtccggattacgtaa 49327674  T
Q  118 tccaga 123  Q
    | ||||    
T  49327675 ttcaga 49327680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 21450422 - 21450592
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||   ||||||| ||||||| ||  | |||||||||    
T  21450422 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattctggaaacactaacaatctggtatggattacgtaa 21450521  T
Q  118 tccagatcagaggtatttat-aaattttttacagacgcgcgagaagacaatattgtggaaaaagtaatagt 187  Q
    ||| || ||||  |||||||  |||||||   || ||||||||||| ||| |  |||||||||||||||||    
T  21450522 tccggaccagatatatttatggaatttttgcaaggcgcgcgagaaggcaacagggtggaaaaagtaatagt 21450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 47374987 - 47375160
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||| || ||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  47374987 cagagacccttaacgtcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacacttacaatctggtccggattacgtaa 47375086  T
Q  118 tccagatcagaggtatttat-aaattttttacagacgcgcgagaagacaatattgtggaaaaagtaatagtcta 190  Q
    | | || |||  |||||||| |||||||| |  | ||||||||||| ||  |  |||| |||||||||||||||    
T  47375087 ttcggaccaggtgtatttatgaaatttttgaagggcgcgcgagaaggcatcagggtgggaaaagtaatagtcta 47375160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 9126904 - 9126802
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |   |||| |||||||  ||||||| ||||||| || || | |||||||    
T  9126904 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgactggattatatattccggaaacactaacaatctggttcggaatacgtaa 9126805  T
Q  118 tcc 120  Q
    |||    
T  9126804 tcc 9126802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 9135011 - 9134909
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |   |||| |||||||  ||||||| ||||||| || || | |||||||    
T  9135011 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgactggattatatattccggaaacactaacaatctggttcggaatacgtaa 9134912  T
Q  118 tcc 120  Q
    |||    
T  9134911 tcc 9134909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 19 - 121
Target Start/End: Complemental strand, 48062049 - 48061947
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaat 118  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||| | || |  |||| |||||||| ||||||| |||||||   |||||||| |||||    
T  48062049 agagaccattgacatcaaagaaagatacaaaatattcatatcgtattggttcggattatatattccaaaaacactaacaatctgacccgaattatgtaat 48061950  T
Q  119 cca 121  Q
    |||    
T  48061949 cca 48061947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 8486770 - 8486826
Alignment:
Q  20 gagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaatta 76  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||    
T  8486770 gagacccttgacatcaaagaaagacacaaaatattcatattgtatttgtccgaatta 8486826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 44207850 - 44208019
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||   | || |||||||  ||||||| ||||||| |||   ||||| |||    
T  44207850 cagagacccttgacatcaaagaaag--acaaaatattcatatcgtacttgtctggactatatattccggaaacactaacaatctggtcaagattacataa 44207947  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    |||  | |||||||||||||  | ||||| || | ||||||||||| ||| |  |||| |||||||||||||    
T  44207948 tccgaaccagaggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagtc 44208019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 9117016 - 9116901
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||||||||||||||||  |||||  ||||||||||||| ||| ||  |||| |||||||| ||||||| ||||||| || || | |||||||    
T  9117016 cagagacccttgacatcaaagaaatgcacaa--tattcatatcgtatttgaccggattatatattccagaaacactaacaatctggttcggaatacgtaa 9116919  T
Q  118 tccagatcagaggtattt 135  Q
    ||| || ||| |||||||    
T  9116918 tccggaccaggggtattt 9116901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 3733787 - 3733830
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcg 61  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  3733787 cagagacccttgacatcaaagaaagacacaaaaatttcatatcg 3733830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 26982586 - 26982629
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcg 61  Q
    |||||||||||||||||||||||||||||||||  |||||||||    
T  26982586 cagagacccttgacatcaaagaaagacacaaaaatttcatatcg 26982629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 53393820 - 53393779
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcatatc 60  Q
    ||||||||||||||||||||||||||||||||  ||||||||    
T  53393820 agagacccttgacatcaaagaaagacacaaaaatttcatatc 53393779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6936346 - 6936314
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  6936346 cagagacccttgacatcaaagaaagacacaaaa 6936314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 41174689 - 41174657
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  41174689 cagagacccttgacatcaaagaaagacacaaaa 41174657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 10509489 - 10509518
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  10509489 cagagacccttgacatcaaagaaagacaca 10509518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 36402977 - 36403006
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  36402977 cagagacccttgacatcaaagaaagacaca 36403006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 41193984 - 41194013
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  41193984 cagagacccttgacatcaaagaaagacaca 41194013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 47646785 - 47646756
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  47646785 cagagacccttgacatcaaagaaagacaca 47646756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 149197 - 149165
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||||| |||||||||||||||||    
T  149197 cagagacccttgacagcaaagaaagacacaaaa 149165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 2182954 - 2182926
Alignment:
Q  18 cagagacccttgacatcaaagaaagacac 46  Q
    |||||||||||||||||||||||||||||    
T  2182954 cagagacccttgacatcaaagaaagacac 2182926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 39353175 - 39353143
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  39353175 cagagaccattgacatcaaagaaagacacaaaa 39353143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 1711478 - 1711651
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||| ||||||| ||||||| ||||  |||||||||    
T  1711478 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccaaaaacactaacaatctggtcctgattacgtaa 1711577  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtcta 190  Q
    ||| || ||| ||||||||| || ||||| || | |||| |||||| ||| || |||| |||||||||||||||    
T  1711578 tccggaccaggggtatttatgaaatttttgcagggcgcgtgagaaggcaacatggtgggaaaagtaatagtcta 1711651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 5344001 - 5344172
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| ||||||   ||||||| ||||||| ||||| |||||||||    
T  5344001 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattctggaaacactaacaatctggtccggattacgtaa 5344100  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    ||| || ||| |||||||||  | ||||| || | ||||||||||| ||| || |||| |||||||||||||    
T  5344101 tccggaccaggggtatttatggaatttttgcagggcgcgcgagaaggcaacatggtgggaaaagtaatagtc 5344172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 24856177 - 24856293
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||||     
T  24856177 agacccttgacatcaaaaaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaatct 24856276  T
Q  121 agatcagaggtatttat 137  Q
     || ||| |||||||||    
T  24856277 ggaccagtggtatttat 24856293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 32746714 - 32746620
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaatta 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||   ||| |||||||  ||||||| ||||||| ||||| ||||    
T  32746714 cagagacccttgacatcaaagaaagacacaaaatactcatatcgtatttgtccgggttatatattccggaaacactaacaatctggtccggatta 32746620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 18 - 189
Target Start/End: Original strand, 6432671 - 6432842
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||   ||||  | ||||  ||||||| ||||| | ||||| | |||| ||    
T  6432671 cagagacccttgacatcgaagaaagacacaaaatattcatatcgtatttgtctggattatctgttccggaaacactaacaatttggtccgga-tacgaaa 6432769  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtct 189  Q
    |||| | ||| |||| || | || ||||| || ||||||||||||| ||| |  |||| ||||||||||||||    
T  6432770 tccataccaggggtagttttgaaatttttgcaggacgcgcgagaaggcaagagggtgggaaaagtaatagtct 6432842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 188
Target Start/End: Original strand, 29047293 - 29047455
Alignment:
Q  27 ttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatccagatca 126  Q
    |||||||||||||||||||||||||||| |||| ||| |||||| ||||| || || |  |||||||  |||||| ||||| | |||||||||| || ||    
T  29047293 ttgacatcaaagaaagacacaaaatatttatattgtatttgtccgaattatatgtttcggaaacactagcaatctggtccggaatacgtaatccggacca 29047392  T
Q  127 gaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    | ||||||| |  | ||||| || | ||||||||||| ||| |  |||| |||||||||||||    
T  29047393 ggggtatttttggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagtc 29047455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 27948462 - 27948417
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgta 63  Q
    |||||||| ||||||||||||||||||||||||  |||||||||||    
T  27948462 cagagacctttgacatcaaagaaagacacaaaaatttcatatcgta 27948417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 25977393 - 25977425
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  25977393 cagagacccttgacatcaaagaaagacacaaaa 25977425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 27114174 - 27114142
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  27114174 cagagacccttgacatcaaagaaagacacaaaa 27114142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 37030516 - 37030548
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  37030516 cagagacccttgacatcaaagaaagacacaaaa 37030548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 12785024 - 12784995
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  12785024 cagagacccttgacatcaaagaaagacaca 12784995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 16513861 - 16513890
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  16513861 cagagacccttgacatcaaagaaagacaca 16513890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 18808849 - 18808820
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  18808849 cagagacccttgacatcaaagaaagacaca 18808820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 38984236 - 38984203
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaat 51  Q
    ||||||| ||||||||||||||||||||||||||    
T  38984236 cagagactcttgacatcaaagaaagacacaaaat 38984203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 2606249 - 2606281
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  2606249 cagagaccattgacatcaaagaaagacacaaaa 2606281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 8734564 - 8734532
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||| ||||||||||||||||||||||||||    
T  8734564 cagagatccttgacatcaaagaaagacacaaaa 8734532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 9715575 - 9715607
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||||||||||||||||| |||||    
T  9715575 cagagacccttgacatcaaagaaagacgcaaaa 9715607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 12723540 - 12723512
Alignment:
Q  19 agagacccttgacatcaaagaaagacaca 47  Q
    |||||||||||||||||||||||||||||    
T  12723540 agagacccttgacatcaaagaaagacaca 12723512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 50
Target Start/End: Original strand, 38679724 - 38679752
Alignment:
Q  22 gacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||    
T  38679724 gacccttgacatcaaagaaagacacaaaa 38679752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 38257695 - 38257871
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||||||||||||||    
T  38257695 agagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccgaattacgtaat 38257794  T
Q  119 ccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaattt 194  Q
    || || ||| |||||||||  | ||||| || | | |||||||||  || |  ||||||||||||||||||||||||    
T  38257795 ccggaccaggggtatttatggaatttttgcagggcacgcgagaaggaaacagggtggaaaaagtaatagtctaattt 38257871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 26791868 - 26791695
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||| | ||||||||||    
T  26791868 agagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtctggattacgtaat 26791769  T
Q  119 ccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaa 191  Q
    ||| | ||| |||||||||  | ||||| || ||||||||||||| ||| |  |||| |||| |||||||||||    
T  26791768 ccaaaccaggggtatttatggaatttttgcaggacgcgcgagaaggcaacagggtgggaaaaataatagtctaa 26791695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 15032803 - 15032978
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||   ||||||| ||||||| ||||| |||||||||    
T  15032803 cagagacccttgacatcaaagaaagacacaaaatattcatgtcgtatttgtccatattatatattctgcaaacactaacaatctggtccggattacgtaa 15032902  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaat 192  Q
    ||| || ||| ||||||||| || ||||| || | ||| ||||||| ||| |  ||| |||| |||||||||||||    
T  15032903 tccggaccaggggtatttatgaaatttttgcagggcgcacgagaaggcaacagggtgaaaaaggtaatagtctaat 15032978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 135
Target Start/End: Complemental strand, 37998543 - 37998426
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||||||||| |||| ||||    
T  37998543 cagagacctttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctagtccggattatgtaa 37998444  T
Q  118 tccagatcagaggtattt 135  Q
    |||||| ||| |||||||    
T  37998443 tccagaccaggggtattt 37998426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 7255661 - 7255832
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||| ||||||||||||||||||||| |||||   |||| |||||||  ||||||| ||||| | ||||| |||||||||    
T  7255661 cagagacccttgacatcaaagaaatacacaaaatattcatatcgtatttgtctggattatatattccgaaaacactaacaatttggtccggattacgtaa 7255760  T
Q  118 tccagatcagaggtatttataaattttttacaga-cgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    |||  | ||| |||||||||  | ||||| |||| ||||||||||| ||| |  |||| |||||||||||||    
T  7255761 tccgaaccaggggtatttatggaatttttgcagagcgcgcgagaaggcaacaaagtgggaaaagtaatagtc 7255832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 108576 - 108405
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||| ||||||||||||| ||||||||||||||||||||||||| ||||||  |||| |||||||| ||| ||| ||||||| || || |||||||||    
T  108576 cagagatccttgacatcaaataaagacacaaaatattcatatcgtatttgtccggattatatattccagaaa-actaacaatctggttcggattacgtaa 108478  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtct 189  Q
    ||  ||  | |||||||||| || |||||||| | ||||||||| |  ||||  |||| ||||||||||||||    
T  108477 tctggactaaaggtatttatgaaatttttacagggcgcgcgagagggaaataaggtgggaaaagtaatagtct 108405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 25 - 120
Target Start/End: Original strand, 43749460 - 43749555
Alignment:
Q  25 ccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||| ||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||||||||  ||||||||||||    
T  43749460 ccttgacattaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctagtccagattacgtaatcc 43749555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 35585322 - 35585441
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| ||||||  |||  ||||| || ||||||| ||||||| ||| | ||||| |||    
T  35585322 cagaaacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattgtatatttcagaaacactaacaatctggtctggattacataa 35585421  T
Q  118 tccagatcagaggtatttat 137  Q
    ||| || ||| ||| |||||    
T  35585422 tccggaccaggggtgtttat 35585441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 29332542 - 29332593
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtc 69  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  29332542 cagagacccttgacattaaagaaagacacaaaatattcatatcgtatttgtc 29332593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 29739466 - 29739513
Alignment:
Q  23 acccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  29739466 accctcgacatcaaagaaagacacaaaatattcatatcgtatttgtcc 29739513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 25529372 - 25529403
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||||||||||||||||||||||    
T  25529372 agagacccttgacatcaaagaaagacacaaaa 25529403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 43270132 - 43270100
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  43270132 cagagaccattgacatcaaagaaagacacaaaa 43270100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 43458057 - 43458025
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||| ||||||||||||||||    
T  43458057 cagagacccttgacatgaaagaaagacacaaaa 43458025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 21 - 187
Target Start/End: Original strand, 11991 - 12158
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| ||||||||||||    
T  11991 agacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaatcc 12090  T
Q  121 agatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagt 187  Q
    ||| ||| |||||||||  | ||||| || | ||||||||||| ||| |  |||| ||||||||||||    
T  12091 agaccaggggtatttatggaatttttgcagggcgcgcgagaaggcaacagggtgggaaaagtaatagt 12158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 24830628 - 24830509
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| ||||||  |||| |||||| | ||||||| ||||||| |||||||||||||||    
T  24830628 cagagaccct-gacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattcaagaaacactaacaatctggtccgaattacgtaa 24830530  T
Q  118 tccagatcagaggtatttata 138  Q
    | |||| ||||||||||||||    
T  24830529 ttcagaccagaggtatttata 24830509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 23421212 - 23421381
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaat 118  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||| |  |||| ||||| |  ||||||| ||||||| ||||  ||||||||||    
T  23421212 agagacccttaacatcaaagaaagacataaaatattcatatcgtatttgttcggattatatatttcggaaacactaacaatctggtccagattacgtaat 23421311  T
Q  119 ccagatcagaggtatttataaattttttacagacg-cgcgagaagacaatattgtggaaaaagtaatagt 187  Q
       || ||| |||||||||  | |||||  ||  | ||||||||| |||||| ||| |||||||||||||    
T  23421312 ttggaccaggggtatttatggaatttttgtaggggacgcgagaaggcaatatggtgaaaaaagtaatagt 23421381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 42190418 - 42190369
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    |||| |||||||||||||| | ||||||||||||||||||||| ||||||    
T  42190418 agactcttgacatcaaagagaaacacaaaatattcatatcgtatttgtcc 42190369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 23144370 - 23144402
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  23144370 cagagacccttgacatcaaagaaagacacaaaa 23144402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 4258974 - 4259005
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  4258974 cagagacccttgacatcaaagaaagacacaaa 4259005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 627252 - 627218
Alignment:
Q  16 agcagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||| ||||||||||||||||||||||||||||||    
T  627252 agcaaagacccttgacatcaaagaaagacacaaaa 627218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 184
Target Start/End: Original strand, 42132203 - 42132301
Alignment:
Q  87 aaacactgacaatctagtccgaattacgtaatccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaat 184  Q
    ||||||| |||||||| ||| ||||||||||| | |||||| ||||||||| || ||||| || ||||| ||||||| ||  |  ||||||||||||||    
T  42132203 aaacactaacaatctaatccaaattacgtaattcggatcaggggtatttatgaaatttttgcaggacgcacgagaaggcagcagggtggaaaaagtaat 42132301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 586676 - 586705
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||||||||||||||||||||    
T  586676 agacccttgacatcaaagaaagacacaaaa 586705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 6347171 - 6347139
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||| ||||||||||||||||||||||||||||    
T  6347171 cagaaacccttgacatcaaagaaagacacaaaa 6347139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 8240255 - 8240287
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||| ||||||||||||||||    
T  8240255 cagagacccttgacattaaagaaagacacaaaa 8240287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 13546451 - 13546483
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||| |||||||||||||||||||||||||    
T  13546451 cagagactcttgacatcaaagaaagacacaaaa 13546483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13678022 - 13677990
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||| |||||||||||||||||||||||||    
T  13678022 cagagactcttgacatcaaagaaagacacaaaa 13677990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 20091437 - 20091405
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  20091437 cagagaccattgacatcaaagaaagacacaaaa 20091405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 29544274 - 29544242
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||| ||||||||    
T  29544274 cagagacccttgacatcaaagaaacacacaaaa 29544242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 32337683 - 32337651
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||| |||||||||||||||||||||||||    
T  32337683 cagagactcttgacatcaaagaaagacacaaaa 32337651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 9e-34; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 194
Target Start/End: Original strand, 22335163 - 22335340
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  22335163 cagagacccttgacatcaaagaaagacagaaaatattcatattgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaa 22335262  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtctaattt 194  Q
    ||| || ||| |||||||||| | ||||| || | ||||||||||| |||||  |||| ||||||| ||||| |||||    
T  22335263 tccggaccaggggtatttatagaatttttgcagggcgcgcgagaaggcaatagggtgggaaaagtagtagtcaaattt 22335340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 21 - 137
Target Start/End: Original strand, 3475530 - 3475646
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||| ||||||   ||||||| ||||||| ||||| ||||||||||||    
T  3475530 agacccttgacatcaaagaaagacaaaaaatattcatatcgtatttgtccgaattatatattctggaaacactaacaatctggtccggattacgtaatcc 3475629  T
Q  121 agatcagaggtatttat 137  Q
     |||||| |||||||||    
T  3475630 ggatcaggggtatttat 3475646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 188
Target Start/End: Original strand, 12525167 - 12525337
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||   |||| |||||||  ||||||| ||||| | ||||| |||||||||    
T  12525167 cagagacccttgacatcaaagaaagacaccaaatattcatatcgtatttgtctggattatatattccggaaacactaacaatttggtccggattacgtaa 12525266  T
Q  118 tccagatcagaggtatttat-aaattttttacagacgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
    ||| || ||| |||||||||  ||||||| |  || |||||||||| ||| | ||||| |||||||||||||    
T  12525267 tccggaccaggggtatttatggaatttttcaggga-gcgcgagaaggcaacaatgtgggaaaagtaatagtc 12525337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 18272142 - 18272023
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| ||||| |||    
T  18272142 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacataa 18272043  T
Q  118 tccagatcagaggtatttat 137  Q
    || ||| ||  |||||||||    
T  18272042 tctagaccaagggtatttat 18272023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 18276796 - 18276677
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| ||||| |||    
T  18276796 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacataa 18276697  T
Q  118 tccagatcagaggtatttat 137  Q
    || ||| ||  |||||||||    
T  18276696 tctagaccaagggtatttat 18276677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 18 - 136
Target Start/End: Original strand, 10313351 - 10313469
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||    
T  10313351 cagagacccttaacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaa 10313450  T
Q  118 tccagatcagaggtattta 136  Q
    || ||| ||| | ||||||    
T  10313451 tctagaccagggatattta 10313469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 39598086 - 39597967
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||| |||||||||| |||||||||||||||||||||||||| ||||||| |||| |||||    ||||||| ||||||| ||||| |||||||||    
T  39598086 cagagacctttgacatcaacgaaagacacaaaatattcatatcgtatttgtccagattatatattatggaaacactaacaatctggtccggattacgtaa 39597987  T
Q  118 tccagatcagaggtatttat 137  Q
    ||| | |||| |||||||||    
T  39597986 tccggctcaggggtatttat 39597967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 5750055 - 5750172
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||   |||| ||||| |  ||||||| ||||||| ||||| |||||||||    
T  5750055 cagagaccctttacatcaaagaaagacacaaaatattcatatcgtatttgtctggattatatattacggaaacactaacaatctggtccggattacgtaa 5750154  T
Q  118 tccagatcagaggtattt 135  Q
    ||| || ||| |||||||    
T  5750155 tccggaccaggggtattt 5750172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 29946959 - 29947048
Alignment:
Q  31 catcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||| |||||||  ||||||| ||||||| ||||| ||||||||||||    
T  29946959 catcaaagaaagacacaaaatattcatatcgtatttgtccgaattatatattccggaaacactaacaatctggtccggattacgtaatcc 29947048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 27 - 137
Target Start/End: Complemental strand, 14270315 - 14270207
Alignment:
Q  27 ttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatccagatca 126  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||| |||||||||||| || ||    
T  14270315 ttgacatcaaagaaagacacaa--tattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccggattacgtaatccggacca 14270218  T
Q  127 gaggtatttat 137  Q
    |||||||||||    
T  14270217 gaggtatttat 14270207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 7199738 - 7199788
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgt 68  Q
    |||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  7199738 cagagaccattgacatcaaagaaagacacaaaatattcatatcgtatttgt 7199788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 10223429 - 10223491
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacata 80  Q
    ||||||| |||||||||||||||||| |||||||||| |||||||| ||||||  ||||||||    
T  10223429 cagagactcttgacatcaaagaaagatacaaaatatttatatcgtatttgtccggattacata 10223491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 6605872 - 6605920
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    ||||| ||||||||||||||||| |||||||||||||| |||| ||||||    
T  6605872 agaccattgacatcaaagaaaga-acaaaatattcataacgtatttgtcc 6605920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 14587611 - 14587640
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  14587611 cagagacccttgacatcaaagaaagacaca 14587640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 21 - 70
Target Start/End: Complemental strand, 29250570 - 29250521
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    |||||||| |||||||||||||||||||||  |||||||| || ||||||    
T  29250570 agacccttaacatcaaagaaagacacaaaaatttcatatcatatttgtcc 29250521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 33801232 - 33801203
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  33801232 cagagacccttgacatcaaagaaagacaca 33801203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 37952170 - 37952141
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  37952170 cagagacccttgacatcaaagaaagacaca 37952141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 12700811 - 12700843
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||| |||||||||||||||||||    
T  12700811 cagagacccttgatatcaaagaaagacacaaaa 12700843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 22817737 - 22817769
Alignment:
Q  19 agagacccttgacatcaaagaaagacacaaaat 51  Q
    ||||||||||||||||||||||| |||||||||    
T  22817737 agagacccttgacatcaaagaaaaacacaaaat 22817769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 27216674 - 27216646
Alignment:
Q  18 cagagacccttgacatcaaagaaagacac 46  Q
    |||||||||||||||||||||||||||||    
T  27216674 cagagacccttgacatcaaagaaagacac 27216646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38860552 - 38860520
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    ||||||||||||||||| |||||||||||||||    
T  38860552 cagagacccttgacatctaagaaagacacaaaa 38860520  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 50262189 - 50262221
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||| ||||||||||||||||||||||||||||    
T  50262189 cagaaacccttgacatcaaagaaagacacaaaa 50262221  T

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Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 52632619 - 52632647
Alignment:
Q  18 cagagacccttgacatcaaagaaagacac 46  Q
    |||||||||||||||||||||||||||||    
T  52632619 cagagacccttgacatcaaagaaagacac 52632647  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 21 - 188
Target Start/End: Original strand, 5464646 - 5464814
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||| | ||||  ||||| ||||||    
T  5464646 agacccttgacatcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatttggtccagattacataatcc 5464745  T
Q  121 agatcagaggtatttataaattttttacaga-cgcgcgagaagacaatattgtggaaaaagtaatagtc 188  Q
     || ||| ||||||||| || ||||| |||| ||||||||||| |||||  |||| |||||||||||||    
T  5464746 ggaccaggggtatttatgaaatttttgcagagcgcgcgagaaggcaataaggtgggaaaagtaatagtc 5464814  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 43333690 - 43333545
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||  |||| |||||||  ||||||| ||||||| | ||| |||||||||    
T  43333690 cagagacccttgacatcaaagaaagacacaaaatattcatattgtatttgtccggattatatattccggaaacactaacaatctggcccggattacgtaa 43333591  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaag 162  Q
    ||| || |||  ||||||||  | ||||| || |||||||||||||    
T  43333590 tccggaccaggagtatttatggaatttttgcaggacgcgcgagaag 43333545  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 21 - 137
Target Start/End: Complemental strand, 41961564 - 41961449
Alignment:
Q  21 agacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaatcc 120  Q
    |||||||| |||||||||||||| ||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| ||||  ||| |||||| |    
T  41961564 agacccttaacatcaaagaaagatacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggtccagatt-cgtaattc 41961466  T
Q  121 agatcagaggtatttat 137  Q
    ||| |||||||||||||    
T  41961465 agaccagaggtatttat 41961449  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 15113603 - 15113686
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatct 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||  |||| || ||||  ||||||| |||||||    
T  15113603 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtatttttccggattatatgttccggaaacactaacaatct 15113686  T

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Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5939339 - 5939384
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgta 63  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
T  5939339 cagaaacccttgacatcaaagaaagacacaaaatattcatatcgta 5939384  T

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Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 34948356 - 34948315
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatat 59  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  34948356 cagagacccttgacatcaaagaaagacacaaaatattcatat 34948315  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 18963219 - 18963174
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgta 63  Q
    |||||||||||||||||||||||||||||||||  |||||||||||    
T  18963219 cagagacccttgacatcaaagaaagacacaaaaatttcatatcgta 18963174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 24168382 - 24168333
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtc 69  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||    
T  24168382 cagagacccttgacatcaaagaaag--acaaaatattcatatcgtatttgtc 24168333  T

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Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 15257385 - 15257428
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcg 61  Q
    |||| ||| |||||||||||||||||||||||||||||||||||    
T  15257385 cagaaacctttgacatcaaagaaagacacaaaatattcatatcg 15257428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 34906207 - 34906167
Alignment:
Q  22 gacccttgacatcaaagaaagacacaaaatattcatatcgta 63  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  34906207 gacccttgacatcaaagaaagacacaaaat-ttcatatcgta 34906167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 187
Target Start/End: Complemental strand, 13278492 - 13278394
Alignment:
Q  90 cactgacaatctagtccgaattacgtaatccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagt 187  Q
    |||| ||||||||||||||||||  |||||| || ||||||||||| |  |  ||||||| | ||||||||||||||  |  |||||||||||||||||    
T  13278492 cactaacaatctagtccgaattatataatccggaccagaggtatttttgtaaattttacagggcgcgcgagaagacagcagggtggaaaaagtaatagt 13278394  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 30490948 - 30490977
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  30490948 cagagacccttgacatcaaagaaagacaca 30490977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 38707482 - 38707511
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  38707482 cagagacccttgacatcaaagaaagacaca 38707511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 7943004 - 7943036
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  7943004 cagagaccattgacatcaaagaaagacacaaaa 7943036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 13278569 - 13278537
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||| ||||||||||||||||||||||||    
T  13278569 cagagaccattgacatcaaagaaagacacaaaa 13278537  T

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Target: chr6 (Bit Score: 72; Significance: 1e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 29435971 - 29435796
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||| |||| |  |||| |||||||| ||||||| ||||||| ||||  |||||||||    
T  29435971 cagagactcttgacatcaaagaaagacacaaaatattcatattgtatttgttcggattatatattccagaaacactaacaatctggtccagattacgtaa 29435872  T
Q  118 tccagatcagaggtatttataaattttttacaga-cgcgcgagaagacaatattgtggaaaaagtaatagtctaat 192  Q
    ||| |||||| ||||||||| || ||||| |||| ||||||||||| ||| |  |||  |||||||||| ||||||    
T  29435871 tccggatcaggggtatttatgaaatttttgcagagcgcgcgagaaggcaacagggtgagaaaagtaatattctaat 29435796  T

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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 18 - 191
Target Start/End: Complemental strand, 480191 - 480018
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||||||||||||||||||||||||||||||| |||||| || ||||||  |||| |||||||  ||||||| | ||| | ||||| |||| ||||    
T  480191 cagagacccttgacatcaaagaaagacacaaaatatccatatcatatttgtccggattatatattccgaaaacactaataatatggtccggattatgtaa 480092  T
Q  118 tccagatcagaggtatttataaattttttacagacgcgcgagaagacaatattgtggaaaaagtaatagtctaa 191  Q
    ||| ||  || |||||||||  | ||||| ||| ||||||||||| ||| || |||| |||| |||||||||||    
T  480091 tccggactaggggtatttatggaatttttgcaggcgcgcgagaaggcaacatggtgggaaaaataatagtctaa 480018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 34949405 - 34949286
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||| ||||||| ||||||||||||||||||||||||||||||| ||||||  |||| |||||||  ||||||| ||||||| || || |||||||||    
T  34949405 cagagatccttgacgtcaaagaaagacacaaaatattcatatcgtatttgtccggattatatattccggaaacactaacaatctggttcggattacgtaa 34949306  T
Q  118 tccagatcagaggtatttat 137  Q
    ||| || ||| |||||||||    
T  34949305 tccggaccaggggtatttat 34949286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 13036765 - 13036593
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtccaaattacatattccataaacactgacaatctagtccgaattacgtaa 117  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||| || |||  |||| ||| |||  ||||||| ||||||| ||||| | |||||||    
T  13036765 cagagaccattgacatgaaaaaaagacacaaaatattcatatcgtatttatccggattatataatccggaaacactaacaatctggtccggaatacgtaa 13036666  T
Q  118 tccagatcagaggtatttataaattttttaca-gacgcgcgagaagacaatattgtggaaaaagtaatagtct 189  Q
    |||||| ||  ||||||||| || ||||| || | ||||||||||| |||||  |||| |||| |||||||||    
T  13036665 tccagaccaagggtatttatgaaatttttgcatggcgcgcgagaaggcaataaggtgggaaaaataatagtct 13036593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 12305343 - 12305395
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||| ||||||    
T  12305343 cagatacccttgacatcaaagaaagacacaaaaatttcatatcgtatttgtcc 12305395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 9305225 - 9305257
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  9305225 cagagacccttgacatcaaagaaagacacaaaa 9305257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 12072 - 12020
Alignment:
Q  18 cagagacccttgacatcaaagaaagacacaaaatattcatatcgtagttgtcc 70  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||| ||||||    
T  12072 cagagaccgttgacatcaaataaagacacaaaatattcatatcgtatttgtcc 12020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1301 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1301
Description:

Target: scaffold1301; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 1531 - 1502
Alignment:
Q  18 cagagacccttgacatcaaagaaagacaca 47  Q
    ||||||||||||||||||||||||||||||    
T  1531 cagagacccttgacatcaaagaaagacaca 1502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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