View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_17 (Length: 463)
Name: NF11901_low_17
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 438
Target Start/End: Original strand, 26250971 - 26251416
Alignment:
| Q |
1 |
tgagttccttagagcttaaggtggaatttatgatattgtaatttttactaccagtataaaactagtttgaaataatagctacaatgtaacttatatgagc |
100 |
Q |
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| T |
26250971 |
tgagttccttagagcttaaggtggaatttatgatattgtaatttttaccaccagtataaaact-gtttgaaataatagctacaatgtaacttatatgagc |
26251069 |
T |
|
| Q |
101 |
aggttgcttgtgaaacaataaaagtgagttagacaatttgttggtgaggtaattgacaaaagttccactttgttcgttacatgtacttgtcagaagctca |
200 |
Q |
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| T |
26251070 |
agattgcttgtgaaacaataaaagtgagttagacaatttgttggtgaggtaattgacaaaagttccactttgttcgttacatgtacttgtcagaagctca |
26251169 |
T |
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| Q |
201 |
tgcggtttac------nnnnnnngtttgaaaaaatgtctcctttctttgaaattattttgtnnnnnnnntagaactgagnnnnnnngtttgaaaggagaa |
294 |
Q |
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| T |
26251170 |
tgcggtttaccttcttattttttatttgaaaaaatgtctcctttctttgaaattattttgtaaaaaaaatagaactgagtttttttgtttgaaaggagaa |
26251269 |
T |
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| Q |
295 |
ccaagtgtttttattgttgagagaaacagttgcaaactttatttgaggatcaaaataaaactaaaa-actggtaatgtttttcttgac-nnnnnnntaca |
392 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
26251270 |
ccaagtgtttttattgttgagagaaacagttgtaaactttatttgaggatcaaaataaaactaaaatactggtaatgtttttcttgacaaaaaaaataca |
26251369 |
T |
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| Q |
393 |
atagaaatgttattcaattcaacacgg-aaataagtatgatctgaaa |
438 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26251370 |
atagaaatgttattcaattcaacacggaaaataagtatgatctgaaa |
26251416 |
T |
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