View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_18 (Length: 455)
Name: NF11901_low_18
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_18 |
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| [»] scaffold0092 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 122 - 440
Target Start/End: Original strand, 2239267 - 2239592
Alignment:
| Q |
122 |
aacgttaatgattgataaaacaaccgctgagagaa---ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacat |
218 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2239267 |
aacgttaatgattgataaaacaaccgctgagagaaaccgatggccgagtgatgcggatggtcaaagccaatcatcgcaccaccaacggttgaatctacat |
2239366 |
T |
|
| Q |
219 |
cacgacggatataggttggattgaaaggcaagagggtgacggtggagatctagagaaa----agagagatgtttttaggtcagagattttacttagttat |
314 |
Q |
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||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| |
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| T |
2239367 |
cacgacggatataggttggattgaaaggcaaaaggatgacggtggagatctagagagaggtcagagagatgtttttaggtcagagattttacttagttac |
2239466 |
T |
|
| Q |
315 |
aaagtagaatgtatatatctgtttatattttgaaagaagaatcgcatgtccttaacttaaaaataggtgtaatcttcttaagtggggtcaattgagagag |
414 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
2239467 |
aaaatagaatgtatatatctgcttatattttgaaagaagaatagcatgtccttaacttaaaaataggtgtagtcttcttaagtggggtcaattgacagag |
2239566 |
T |
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| Q |
415 |
ttgtatggtttaatatgtgtgttaga |
440 |
Q |
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|||||||||||||||||||||||||| |
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| T |
2239567 |
ttgtatggtttaatatgtgtgttaga |
2239592 |
T |
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Back To:
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Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 135 - 274
Target Start/End: Original strand, 40681682 - 40681824
Alignment:
| Q |
135 |
gataaaacaaccgctgagagaa---ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgacggatata |
231 |
Q |
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| T |
40681682 |
gataaaacaaccgctgagagaaaccggtggccgagtgatgcggacggcctaagccaatcatcgcaccaccaacgattgaatctacatcgcggcggatata |
40681781 |
T |
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| Q |
232 |
ggttggattgaaaggcaagagggtgacggtggagatctagaga |
274 |
Q |
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| T |
40681782 |
ggttggattggaaggaaggagggtgacggtggagatctagaga |
40681824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 157 - 274
Target Start/End: Original strand, 6706315 - 6706432
Alignment:
| Q |
157 |
ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgacggatataggttggattgaaaggcaagagggtg |
256 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||| | ||||||||||||| || |||||||||||| ||||| |||| | ||||||| |
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| T |
6706315 |
ggtggccgagtgatgcggacggcctaagccaatcatcgcaccaccaacgattgaatctacatcgcggcggatataggttagattggaaggaaggagggtg |
6706414 |
T |
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| Q |
257 |
acggtggagatctagaga |
274 |
Q |
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| T |
6706415 |
acggtggagatctagaga |
6706432 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 40900702 - 40900841
Alignment:
| Q |
138 |
aaaacaaccgctgagagaa---ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgacggatataggt |
234 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||| | ||||||||||||| | || |||||||| |
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| T |
40900702 |
aaaacaaccgctgagagaaaccggtggccgagtgatgcggacggtccaagccaatcatcgcaccatcaacgattgaatctacatcgtggcgaatataggt |
40900801 |
T |
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| Q |
235 |
tggattgaaaggcaagagggtgacggtggagatctagaga |
274 |
Q |
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| T |
40900802 |
tggattggaagggaggagggtgatagtggagatctagaga |
40900841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0092 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0092
Description:
Target: scaffold0092; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 128 - 269
Target Start/End: Original strand, 23701 - 23845
Alignment:
| Q |
128 |
aatgattgataaaacaaccgctgagagaa---ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgac |
224 |
Q |
| |
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|||||| || ||||||||| ||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||| | || |||||| |||||||| |
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| T |
23701 |
aatgatggagaaaacaaccactgagagaaaccggtggccgagtaatgcggacggccaaagccaatcatcgcaccaccaacgattaaatctatatcacgac |
23800 |
T |
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| Q |
225 |
ggatataggttggattgaaaggcaagagggtgacggtggagatct |
269 |
Q |
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| T |
23801 |
ggatataggttggattggaaggaaggagggtgccggtgaagatct |
23845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 15496685 - 15496824
Alignment:
| Q |
138 |
aaaacaaccgctgagagaag---gtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgacggatataggt |
234 |
Q |
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||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||||| || |||||||||| |
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| T |
15496685 |
aaaacaaccactgagagaaaccagtggccgagtgatgcggacggcttaagccaatcatcgcatcaccaacgattgaatctacatcgcggcggatataggc |
15496784 |
T |
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| Q |
235 |
tggattgaaaggcaagagggtgacggtggagatctagaga |
274 |
Q |
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||||||| |||| | ||||||||||||||||||||||||| |
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| T |
15496785 |
tggattggaaggaaggagggtgacggtggagatctagaga |
15496824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 274
Target Start/End: Complemental strand, 21590222 - 21590082
Alignment:
| Q |
138 |
aaaacaaccgctgagagaa---ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatca-cgacggatatagg |
233 |
Q |
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|||||||||||||||| || | ||||||||||||||| || | | |||||| ||||||||||||||| | |||||||||||||| | |||||||||| |
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| T |
21590222 |
aaaacaaccgctgagaaaaactgatggccgagtgatgcgaacagcccaagccagtcatcgcaccaccaacgattgaatctacatcagcagcggatatagg |
21590123 |
T |
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| Q |
234 |
ttggattgaaaggcaagagggtgacggtggagatctagaga |
274 |
Q |
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|||||||| |||| | ||||||||| |||||||||||||| |
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| T |
21590122 |
ttggattggaagggaggagggtgacaatggagatctagaga |
21590082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 157 - 274
Target Start/End: Complemental strand, 22335158 - 22335041
Alignment:
| Q |
157 |
ggtggccgagtgatgcggacggtcaaagccaatcatcgcaccaccaaaggttgaatctacatcacgacggatataggttggattgaaaggcaagagggtg |
256 |
Q |
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||||| |||||||||||||||| |||||| || || ||||||||| | || |||||||||||| ||||||||||||||||| ||| | ||||| | |
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| T |
22335158 |
ggtggtcgagtgatgcggacggccaaagcatgtcgtcacaccaccaacgattatatctacatcacggaggatataggttggattgggagggaggagggcg |
22335059 |
T |
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| Q |
257 |
acggtggagatctagaga |
274 |
Q |
| |
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|||||||||||||||||| |
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| T |
22335058 |
acggtggagatctagaga |
22335041 |
T |
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