View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11901_low_2 (Length: 809)
Name: NF11901_low_2
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 744; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 744; E-Value: 0
Query Start/End: Original strand, 11 - 794
Target Start/End: Complemental strand, 43061331 - 43060549
Alignment:
| Q |
11 |
acatcaacaaaaatatcagcaagtttcaactatttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaat |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43061331 |
acatcaacaaaaatatcagcaagtttcaactatttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaat |
43061232 |
T |
|
| Q |
111 |
taaattgtagccacctatactgagaaaacagcaggagacaaatacaaacagtcaggtaaaactgacaataaaatatgtaaattgaaccgaaacacttgca |
210 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
43061231 |
taaattgtagccacctatactgagaaaccagcaggagacaaatacaaacagtcaggtaaaactgacaataaaatatgtaaattgaactgaaacacttgca |
43061132 |
T |
|
| Q |
211 |
tgccaaaggaaagagcggaaaataaaactgatataacgcagctggaacacttggagtcgtatcagaacccaggtgcggaagaaatgcggctacgtaccag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43061131 |
tgccaaaggaaagagcggaaaataaaactgatataacgcagctggaacacttggagtcgtatcagaacccaggtgcggaagaaatgcggctacgtaccag |
43061032 |
T |
|
| Q |
311 |
ctgcaacatcaaaacagctcggctgcacaacagcaacctacatgccaaaaaccagctttgaactatgcagaaaattacctcaaacttgctccaatgcaga |
410 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
43061031 |
ctgcaacatcgaaacagctcggctgcacaacagcaacccacatgccaaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaatgcaga |
43060932 |
T |
|
| Q |
411 |
aaatcaccttgaaccaactatgaattatgcagaaaaacacacgcgaaaaacacctgattcagtaatagaaatattccaaaccaaaactaaaactaccaaa |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
43060931 |
aaatcaccttgaaccaactatgaattatgcagaaaaacacacgcgaaaaacacctgattcagtaatagaaatataccaaaccaaaactaaaactaccaaa |
43060832 |
T |
|
| Q |
511 |
ctactacatttaaaccctatatgcattaatggcctcaataaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaag |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
43060831 |
ctactacatttaaaccctatatgcattaatgccctcaataaacatatgaaatttatttgtgaccagattccagtgatttgtgacccgatttaattgcaag |
43060732 |
T |
|
| Q |
611 |
gcacaatatcattcaagcatataaaatatcatacctcaatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaa |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43060731 |
gcacaatatcattcaagcatataaaatatcatacctcaatatcc-tttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaa |
43060633 |
T |
|
| Q |
711 |
tcaatacacataagcatcttagagtcatagcttgttcaaagttcaaaaccaaaagtaaaaactacgcgacgcacgggtcctatc |
794 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43060632 |
tcaatacacataagcatcttagagtcatagcttgttcaaagttcaaaaccaaaagtaaaaactacgcgacgcacgggtcctatc |
43060549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 9e-97
Query Start/End: Original strand, 356 - 772
Target Start/End: Complemental strand, 1480637 - 1480225
Alignment:
| Q |
356 |
caaaaaccagctttgaactatgcagaaaattacctcaaacttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa-aacac |
450 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
1480637 |
caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacac |
1480538 |
T |
|
| Q |
451 |
acgcgaaaaacacctgattcagta---atagaaatattccaaaccaaaactaaaactaccaaactactacatttaaaccctatatgcattaatggcctca |
547 |
Q |
| |
|
||| |||||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||||||| |||| ||||||| ||| |
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| T |
1480537 |
gtgcgtaaaacacccgattcagtagtaataggaagataccaaacc-----------taccaaactactacatttaaaccctctatgtattaatgctttca |
1480449 |
T |
|
| Q |
548 |
ataaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaaggcacaatatcattcaagcatataaaatatcatacctc |
647 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| ||| ||||| | || |||||||||||| | ||| |||||||||||||||||||||| |||||||| |
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|
| T |
1480448 |
ataaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcatgacacgatatcattcaagcatataaaatttcatacctt |
1480349 |
T |
|
| Q |
648 |
aatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcatagcttgttc |
747 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||| |
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|
| T |
1480348 |
aatatcc-cttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttc |
1480250 |
T |
|
| Q |
748 |
aaagttcaaaaccaaaagtaaaaac |
772 |
Q |
| |
|
||||||||||||||||| ||||||| |
|
|
| T |
1480249 |
aaagttcaaaaccaaaaataaaaac |
1480225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 5e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 356 - 756
Target Start/End: Complemental strand, 19180441 - 19180045
Alignment:
| Q |
356 |
caaaaaccagctttgaactatgcagaaaattacctcaaacttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa-aacac |
450 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| ||||| |
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|
| T |
19180441 |
caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacac |
19180342 |
T |
|
| Q |
451 |
acgcgaaaaacacctgattcagta---atagaaatattccaaaccaaaactaaaactaccaaactactacatttaaaccctatatgcattaatggcctca |
547 |
Q |
| |
|
||| |||||||| ||||||||| |||| || || ||||||| ||||||||||||||||||||||||| |||| ||||||| ||| |
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|
| T |
19180341 |
gtgcgtaaaacacccgattcagtagtaataggaagataccaaacc-----------taccaaactactacatttaaaccctctatggattaatgctttca |
19180253 |
T |
|
| Q |
548 |
ataaacatatgaaatttatttgtgaccagattccagtcatttgtgacccgatttaattgcaaggcacaatatcattcaagcatataaaatatcatacctc |
647 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| ||| ||||| | || |||||||||||||| ||| |||||||||||||||||||||| |||||||| |
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|
| T |
19180252 |
ataaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcatacctt |
19180153 |
T |
|
| Q |
648 |
aatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcatagcttgttc |
747 |
Q |
| |
|
||||||| ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||| |
|
|
| T |
19180152 |
aatatcc-cttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttc |
19180054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 771
Target Start/End: Complemental strand, 22998014 - 22997884
Alignment:
| Q |
640 |
catacctcaatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcata |
739 |
Q |
| |
|
|||||||||||||||||| || |||||||||| || ||||||||| || ||||||||| ||| |||||||||| | || |||||| ||| ||||| | |
|
|
| T |
22998014 |
catacctcaatatcctttaaaca-tctcaaacataaaaaatcaacttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagtcaca |
22997916 |
T |
|
| Q |
740 |
gcttgttcaaagttcaaaaccaaaagtaaaaa |
771 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |
|
|
| T |
22997915 |
acttgttcaaagtttaaaaccaaaaataaaaa |
22997884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 640 - 771
Target Start/End: Original strand, 23790389 - 23790519
Alignment:
| Q |
640 |
catacctcaatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcata |
739 |
Q |
| |
|
|||||||||||||||||| || |||||||||| || ||||||||| || ||||||||| ||| |||||||||| | || |||||| ||| ||||| | |
|
|
| T |
23790389 |
catacctcaatatcctttaaaca-tctcaaacataaaaaatcaacttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagtcaca |
23790487 |
T |
|
| Q |
740 |
gcttgttcaaagttcaaaaccaaaagtaaaaa |
771 |
Q |
| |
|
||||||||||||| |||||||||| |||||| |
|
|
| T |
23790488 |
acttgttcaaagtttaaaaccaaaaataaaaa |
23790519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 640 - 771
Target Start/End: Complemental strand, 18144401 - 18144271
Alignment:
| Q |
640 |
catacctcaatatccttttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaataca-cataagcatcttagagtcat |
738 |
Q |
| |
|
||||||||||||||| ||||| |||||||||| || |||||||| || |||||| | ||| |||||||||| ||| || |||||||||| |||||| |
|
|
| T |
18144401 |
catacctcaatatcc-tttaaacatctcaaacataaaatatcaacttcccattaatcatgctttatacaaatcaa-acaccaaaagcatcttaaagtcat |
18144304 |
T |
|
| Q |
739 |
agcttgttcaaagttcaaaaccaaaagtaaaaa |
771 |
Q |
| |
|
| ||| ||||||||| ||||||||| |||||| |
|
|
| T |
18144303 |
aacttattcaaagtttgaaaccaaaaataaaaa |
18144271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 682 - 772
Target Start/End: Original strand, 53554419 - 53554509
Alignment:
| Q |
682 |
aactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcatagcttgttcaaagttcaaaaccaaaagtaaaaac |
772 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||| | || ||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
53554419 |
aacttccccttaatcttcctttcttcaaatcaaaccccagaagcatcttagagccgtagcttgttcaaaattcaaaaccaaaaataaaaac |
53554509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 357 - 449
Target Start/End: Complemental strand, 1380398 - 1380302
Alignment:
| Q |
357 |
aaaaaccagctttgaactatgcagaaaattacctcaaacttgctcca----atgcagaaaatcaccttgaaccaactatgaattatgcagaaaaaca |
449 |
Q |
| |
|
||||| ||||| |||||||||||||| |||||||| ||| |||||| ||| ||||||| | ||| ||||| || ||||||||||||||||||| |
|
|
| T |
1380398 |
aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaaaaca |
1380302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 1380662 - 1380596
Alignment:
| Q |
43 |
tttgtttgaaagtgtttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaa |
109 |
Q |
| |
|
|||||||||| | ||||||||||| ||||||||| | ||| ||||| |||||| |||||||| |||| |
|
|
| T |
1380662 |
tttgtttgaaggcgtttatttaactatcttgaaatcaaactaaaaccaactacgctaaagagacaaa |
1380596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 110
Target Start/End: Complemental strand, 40910989 - 40910936
Alignment:
| Q |
57 |
tttatttaaccatcttgaaaacgaaccaaaacaaactacactaaagagccaaat |
110 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
40910989 |
tttatttaactatctctaaaacaaaccaaaaccaactacactaaagagacaaat |
40910936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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