View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_21 (Length: 424)
Name: NF11901_low_21
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 8 - 407
Target Start/End: Complemental strand, 2504164 - 2503762
Alignment:
| Q |
8 |
caattctagtatgctaaccaaaccatgcatctaattaaaatttgtttagaaaatttaataataa---gtagcctcatgattggaccatgaaggttgaaga |
104 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2504164 |
caattctagtatgctaaccaaatcatgcatctaattaaaatttgtttagaaaatttaataataataagtagcctcatgattggaccatgaaggttgaaga |
2504065 |
T |
|
| Q |
105 |
aaaaagagacctcacctgtccatatccattgccacgaataagataaatggaaaagaaagagaaccaaatcaagagtaacacccctaatttcaaccaaggg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504064 |
aaaaagagacctcacctgtccatatccattgccacgaataagataaatggaaaagaaagagaaccaaatcaagagtaacacccctaatttcaaccaaggg |
2503965 |
T |
|
| Q |
205 |
atacacaacttgctagaattttcttgagggaccaaaacaagattctcttcaacagtttttgacccatcattatccttgtgcatagtaatctcattttcta |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503964 |
atacacaacttgctagaattttcttgagggaccaaaacaagattctcttcaacagtttttgacccatcattatccttgtgcatagtaatctcattttcta |
2503865 |
T |
|
| Q |
305 |
gcaaccctttttcaatttcctgaactccaatatttttccttatctcttctgattcaatattccaaaacataaccccacttttacaagtttttgaggtaga |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2503864 |
gcaaccctttttcaatttcctgaactccaatatttttccttatctcttctgattcaatattccaaaacataaccccacttttacaagtttttgaggtaga |
2503765 |
T |
|
| Q |
405 |
cca |
407 |
Q |
| |
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||| |
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| T |
2503764 |
cca |
2503762 |
T |
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