View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_23 (Length: 405)
Name: NF11901_low_23
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 33176556 - 33176945
Alignment:
| Q |
1 |
tacttacacatagacaaccatctaagtactacttttatttaatttgatgttttagatctaaaaccacttttacttgatgatttctatcatcaataaagat |
100 |
Q |
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| T |
33176556 |
tacttatacatagacaaccatctaagtactacttttatttaattcgatgttttagatctaaaaccacttttacttaatgatttctatcatcaataaagat |
33176655 |
T |
|
| Q |
101 |
ttcacttgatgttcaaccctaatattggtggtagtcggcgaccccacaatggtcggtggtgaggctccgacattaatggtggtgctccggaggttggcca |
200 |
Q |
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| T |
33176656 |
ttcacttgatgttcaaccctaatattggtggtagtcggcgatcccacaatggtcggtggtgaggctccgagattaatggtggtgctcccgaggttggcca |
33176755 |
T |
|
| Q |
201 |
cctcccaccaccatcactattataaataataaattgaat-nnnnnnnnttggtttataactttatgaggtgtctaggaaacattcactttaaatattaca |
299 |
Q |
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| T |
33176756 |
cctcccaccaccatcactattataaataataaattaaataaaaaaaaattggtttataactttatgaggtgtctaggaaacattcactttaaatattaca |
33176855 |
T |
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| Q |
300 |
tatttgtgactgtggttttgtatatattttacctcttttaaagatctaaattagagaactcgcttcaatttaatttgacaatgatatgta |
389 |
Q |
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| T |
33176856 |
tatttgtgactgtggttttgtatatattttacctcttttaaagatctaaattagagaactcgcttcaatttaatttgacaatgatatgta |
33176945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 35363316 - 35363282
Alignment:
| Q |
200 |
acctcccaccaccatcactattataaataataaat |
234 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
35363316 |
acctcccaccaccaccactattataaataataaat |
35363282 |
T |
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