View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_25 (Length: 384)
Name: NF11901_low_25
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 20 - 341
Target Start/End: Original strand, 40584135 - 40584456
Alignment:
| Q |
20 |
attagtcaaaaccaacaaaggatgagctaagagcacagtcatattctgcagtgtatatccaattcctggtttaacatggttttagtcatgcatgtcaaaa |
119 |
Q |
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| T |
40584135 |
attagtcaaaacctacaaaggatgagctaagagcacagtcatattctgcagtgtatatccaattcctgatttaacatggttttagtcatgcatgtcaaaa |
40584234 |
T |
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| Q |
120 |
tcaacaaagggaaaccatagaataagtaaaggtttcccttgctgaaaacaaatcctcacctcaatttctttctgagatatctattgagattttggacttg |
219 |
Q |
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| T |
40584235 |
tcaacaaagggaaaccatagaataagtaaaggtttcccttgctgaaaacaaatcctcacctcaatttctttctgagatatctattgagattttggacttg |
40584334 |
T |
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| Q |
220 |
gacccagttgttatcttactgatatagtccatttgactgctttacccttttactgtacttggaccttttctatttccaaaaggccaaaagtatgtgaaag |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40584335 |
gacccagttgttatcttactgatatagtccatttgactgctttacccttttactgtacttggaccttttctatttccaaaaggccaaaagtatgtgaaag |
40584434 |
T |
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| Q |
320 |
aaataaatggtgcttggtgctc |
341 |
Q |
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| T |
40584435 |
aaataaatggtgcttggtgctc |
40584456 |
T |
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