View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_27 (Length: 376)
Name: NF11901_low_27
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 368
Target Start/End: Complemental strand, 11885200 - 11884849
Alignment:
| Q |
19 |
gttacatggtgaaatgaatttttatacaaatctaaaattatttatacattgttgagacaca--gataaatattgtttaatacatgatcaatataacttta |
116 |
Q |
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| T |
11885200 |
gttacatggtgaaatgaatttttatacaaatctaaaattatttatacattgttgagacacaaagataaatattgtttaatacatgatcaatataacttta |
11885101 |
T |
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| Q |
117 |
ttnnnnnnnttgtaaaggtgatttataaaatacaaacttttgatccaacacttaatttaacatctccgctacatatatagtattcattttttcatctcta |
216 |
Q |
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| T |
11885100 |
ttaaaaaaattgtaaaggtgatttataaaatacaaacttttgatccaacacttaatttaacatctccactacatatatagtattcattttttcatcttta |
11885001 |
T |
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| Q |
217 |
cttctaataatatatcaaaggagttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatct |
316 |
Q |
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| T |
11885000 |
cttctaataatatatcaaaggagttttactttaatcaagagttttgcatgatctgtttggaaataggaagcattatgctcaatattttaaaactcgatct |
11884901 |
T |
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| Q |
317 |
tgtgtatccaaaaactcatcaaactacactcttttgcgatacttttcttctc |
368 |
Q |
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| T |
11884900 |
tgtgtatccaaaaactcatcaaactacactcttttgcgatacttttcttctc |
11884849 |
T |
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