View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_29 (Length: 357)

Name: NF11901_low_29
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_29
NF11901_low_29
[»] chr8 (9 HSPs)
chr8 (25-343)||(34877527-34877848)
chr8 (1-30)||(10934597-10934626)
chr8 (1-30)||(33070282-33070311)
chr8 (1-29)||(10934720-10934748)
chr8 (1-29)||(13496552-13496580)
chr8 (1-29)||(23627661-23627689)
chr8 (1-29)||(24287780-24287808)
chr8 (1-29)||(31810329-31810357)
chr8 (1-29)||(40640273-40640301)
[»] chr3 (13 HSPs)
chr3 (1-37)||(12708797-12708833)
chr3 (1-32)||(52215997-52216028)
chr3 (1-31)||(7882274-7882304)
chr3 (1-30)||(9170210-9170239)
chr3 (1-30)||(38677559-38677588)
chr3 (1-29)||(331915-331943)
chr3 (1-29)||(8504845-8504873)
chr3 (1-29)||(9170107-9170135)
chr3 (1-29)||(10872789-10872817)
chr3 (1-29)||(12708683-12708711)
chr3 (1-29)||(36447973-36448001)
chr3 (1-29)||(45736682-45736710)
chr3 (1-29)||(54690947-54690975)
[»] chr6 (5 HSPs)
chr6 (1-32)||(15517083-15517114)
chr6 (1-35)||(6560774-6560808)
chr6 (1-31)||(18097053-18097083)
chr6 (1-31)||(34379729-34379759)
chr6 (1-30)||(31398343-31398372)
[»] chr2 (12 HSPs)
chr2 (1-32)||(31101941-31101972)
chr2 (1-31)||(8510622-8510652)
chr2 (1-31)||(13994306-13994336)
chr2 (1-30)||(11726490-11726519)
chr2 (1-30)||(26229562-26229591)
chr2 (1-29)||(15119894-15119922)
chr2 (1-29)||(15446774-15446802)
chr2 (1-29)||(26229441-26229469)
chr2 (1-29)||(26234141-26234169)
chr2 (1-29)||(32316413-32316441)
chr2 (1-29)||(38465784-38465812)
chr2 (1-29)||(41805269-41805297)
[»] chr7 (5 HSPs)
chr7 (1-31)||(5950311-5950341)
chr7 (1-29)||(10095714-10095742)
chr7 (1-29)||(25245260-25245288)
chr7 (1-29)||(36547582-36547610)
chr7 (1-29)||(43103067-43103095)
[»] chr1 (12 HSPs)
chr1 (1-35)||(1036004-1036038)
chr1 (1-39)||(2122555-2122593)
chr1 (1-31)||(23398412-23398442)
chr1 (1-35)||(34953885-34953919)
chr1 (1-29)||(14214545-14214573)
chr1 (1-29)||(14214646-14214674)
chr1 (1-37)||(29374017-29374053)
chr1 (1-29)||(33939414-33939442)
chr1 (1-29)||(39216098-39216126)
chr1 (1-29)||(39216216-39216244)
chr1 (1-29)||(45115287-45115315)
chr1 (1-29)||(52923318-52923346)
[»] scaffold0059 (2 HSPs)
scaffold0059 (1-30)||(4490-4519)
scaffold0059 (1-29)||(4369-4397)
[»] chr5 (7 HSPs)
chr5 (1-29)||(71254-71282)
chr5 (1-33)||(5259502-5259534)
chr5 (1-29)||(7306553-7306581)
chr5 (1-29)||(10437754-10437782)
chr5 (1-29)||(14772543-14772571)
chr5 (1-29)||(16441608-16441636)
chr5 (1-29)||(26141750-26141778)
[»] chr4 (14 HSPs)
chr4 (1-29)||(6126769-6126797)
chr4 (1-29)||(19934633-19934661)
chr4 (1-37)||(22720623-22720659)
chr4 (1-37)||(22923646-22923682)
chr4 (1-37)||(22928299-22928335)
chr4 (1-37)||(22984578-22984614)
chr4 (1-37)||(22998166-22998202)
chr4 (1-29)||(24851527-24851555)
chr4 (1-33)||(29006826-29006858)
chr4 (1-29)||(33036981-33037009)
chr4 (1-29)||(36072565-36072593)
chr4 (1-29)||(54164808-54164836)
chr4 (1-29)||(54164930-54164958)
chr4 (1-29)||(54713093-54713121)


Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 25 - 343
Target Start/End: Complemental strand, 34877848 - 34877527
Alignment:
Q  25 gtgtactttattagtgcaggtaagttttacttcgcctaatactactaattcataaaagatactagtagtatattttaaaaagaacattgaattggtgtcc 124  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||      ||||||||| |||||||||||||||||||||||    
T  34877848 gtgtactttattagtacagttaagttttacttcgcctaatactagtaattcataaaagata------gtatatttttaaaagaacattgaattggtgtcc 34877755  T
Q  125 ttgtaacttgattccacgtacgtaccatgtttcaacgt----gaacataaacaaaacagttattggcacaacagacaacgttttgatttccgcgtttcca 220  Q
    |||| |||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34877754 ttgttacttgattccacgtacgtaccatgtttcaacgtaaacaaacataaacaaaacagttattggcacaacagacaacgttttgatttccgcgtttcca 34877655  T
Q  221 t-----catcacatcaccgttcggttcggttccagtccaaaacaacaacccccaagcataacattctctagatactctcttccaaactcacgtatctgtc 315  Q
    |     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34877654 tcatcacatcacatcaccgttcggttcggttccagtccaaaacaacaacccccaagcataacattctctagatactctcttccaaactcacgtatctgtc 34877555  T
Q  316 tataacacatggaattcggtttatttgt 343  Q
    ||||||||||||||||||||||||||||    
T  34877554 tataacacatggaattcggtttatttgt 34877527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 10934626 - 10934597
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  10934626 tttgcttataatagtgaccggagggtgtac 10934597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 33070282 - 33070311
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  33070282 tttgcttataatagtgaccggagggtgtac 33070311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10934720 - 10934748
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10934720 tttgcttataatagtgaccggagggtgta 10934748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 13496552 - 13496580
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  13496552 tttgcttataatagtgaccggagggtgta 13496580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 23627689 - 23627661
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  23627689 tttgcttataatagtgaccggagggtgta 23627661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 24287808 - 24287780
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  24287808 tttgcttataatagtgaccggagggtgta 24287780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 31810357 - 31810329
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  31810357 tttgcttataatagtgaccggagggtgta 31810329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 40640301 - 40640273
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  40640301 tttgcttataatagtgaccggagggtgta 40640273  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12708797 - 12708833
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    |||||||||||||||||||||||||||||||| ||||    
T  12708797 tttgcttataatagtgaccggagggtgtacttaatta 12708833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 52215997 - 52216028
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  52215997 tttgcttataatagtgaccggagggtgtactt 52216028  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 7882304 - 7882274
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  7882304 tttgcttataatagtgaccggagggtgtact 7882274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9170210 - 9170239
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  9170210 tttgcttataatagtgaccggagggtgtac 9170239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 38677588 - 38677559
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  38677588 tttgcttataatagtgaccggagggtgtac 38677559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 331915 - 331943
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  331915 tttgcttataatagtgaccggagggtgta 331943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 8504873 - 8504845
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  8504873 tttgcttataatagtgaccggagggtgta 8504845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 9170135 - 9170107
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  9170135 tttgcttataatagtgaccggagggtgta 9170107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10872789 - 10872817
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10872789 tttgcttataatagtgaccggagggtgta 10872817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 12708711 - 12708683
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  12708711 tttgcttataatagtgaccggagggtgta 12708683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 36447973 - 36448001
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36447973 tttgcttataatagtgaccggagggtgta 36448001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 45736710 - 45736682
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  45736710 tttgcttataatagtgaccggagggtgta 45736682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54690947 - 54690975
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54690947 tttgcttataatagtgaccggagggtgta 54690975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 15517114 - 15517083
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  15517114 tttgcttataatagtgaccggagggtgtactt 15517083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 6560774 - 6560808
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  6560774 tttgcttatattagtgaccggagggtgtactttat 6560808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18097083 - 18097053
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  18097083 tttgcttataatagtgaccggagggtgtact 18097053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 34379759 - 34379729
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  34379759 tttgcttataatagtgaccggagggtgtact 34379729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 31398343 - 31398372
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  31398343 tttgcttataatagtgaccggagggtgtac 31398372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 31101972 - 31101941
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactt 32  Q
    ||||||||||||||||||||||||||||||||    
T  31101972 tttgcttataatagtgaccggagggtgtactt 31101941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 8510622 - 8510652
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  8510622 tttgcttataatagtgaccggagggtgtact 8510652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 13994306 - 13994336
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  13994306 tttgcttataatagtgaccggagggtgtact 13994336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 11726519 - 11726490
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  11726519 tttgcttataatagtgaccggagggtgtac 11726490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 26229562 - 26229591
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  26229562 tttgcttataatagtgaccggagggtgtac 26229591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 15119894 - 15119922
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  15119894 tttgcttataatagtgaccggagggtgta 15119922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 15446802 - 15446774
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  15446802 tttgcttataatagtgaccggagggtgta 15446774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26229469 - 26229441
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26229469 tttgcttataatagtgaccggagggtgta 26229441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 26234141 - 26234169
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26234141 tttgcttataatagtgaccggagggtgta 26234169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 32316441 - 32316413
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  32316441 tttgcttataatagtgaccggagggtgta 32316413  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 38465812 - 38465784
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  38465812 tttgcttataatagtgaccggagggtgta 38465784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 41805297 - 41805269
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  41805297 tttgcttataatagtgaccggagggtgta 41805269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 5950311 - 5950341
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  5950311 tttgcttataatagtgaccggagggtgtact 5950341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10095742 - 10095714
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10095742 tttgcttataatagtgaccggagggtgta 10095714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 25245260 - 25245288
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  25245260 tttgcttataatagtgaccggagggtgta 25245288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36547610 - 36547582
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36547610 tttgcttataatagtgaccggagggtgta 36547582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 43103095 - 43103067
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  43103095 tttgcttataatagtgaccggagggtgta 43103067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1036004 - 1036038
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  1036004 tttgcttatattagtgaccggagggtgtactttat 1036038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 2122593 - 2122555
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttattagt 39  Q
    |||||||||||||||||||||||| |||||| |||||||    
T  2122593 tttgcttataatagtgaccggaggatgtactctattagt 2122555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 23398442 - 23398412
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtact 31  Q
    |||||||||||||||||||||||||||||||    
T  23398442 tttgcttataatagtgaccggagggtgtact 23398412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34953919 - 34953885
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttat 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  34953919 tttgcttataatagtgactggagggtgtactttat 34953885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14214573 - 14214545
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14214573 tttgcttataatagtgaccggagggtgta 14214545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 14214646 - 14214674
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14214646 tttgcttataatagtgaccggagggtgta 14214674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29374053 - 29374017
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  29374053 tttgcttataatagtgaccggaggatgtacattatta 29374017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33939414 - 33939442
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  33939414 tttgcttataatagtgaccggagggtgta 33939442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 39216126 - 39216098
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  39216126 tttgcttataatagtgaccggagggtgta 39216098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 39216216 - 39216244
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  39216216 tttgcttataatagtgaccggagggtgta 39216244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 45115287 - 45115315
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  45115287 tttgcttataatagtgaccggagggtgta 45115315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 52923346 - 52923318
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  52923346 tttgcttataatagtgaccggagggtgta 52923318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 4490 - 4519
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtac 30  Q
    ||||||||||||||||||||||||||||||    
T  4490 tttgcttataatagtgaccggagggtgtac 4519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 4397 - 4369
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  4397 tttgcttataatagtgaccggagggtgta 4369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 71282 - 71254
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  71282 tttgcttataatagtgaccggagggtgta 71254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5259502 - 5259534
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtacttt 33  Q
    |||||||||| ||||||||||||||||||||||    
T  5259502 tttgcttatattagtgaccggagggtgtacttt 5259534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 7306553 - 7306581
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  7306553 tttgcttataatagtgaccggagggtgta 7306581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 10437754 - 10437782
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  10437754 tttgcttataatagtgaccggagggtgta 10437782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 14772571 - 14772543
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  14772571 tttgcttataatagtgaccggagggtgta 14772543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 16441636 - 16441608
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  16441636 tttgcttataatagtgaccggagggtgta 16441608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 26141778 - 26141750
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  26141778 tttgcttataatagtgaccggagggtgta 26141750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 6126769 - 6126797
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  6126769 tttgcttataatagtgaccggagggtgta 6126797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 19934661 - 19934633
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  19934661 tttgcttataatagtgaccggagggtgta 19934633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 22720623 - 22720659
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22720623 tttgcttataatagtgaccggagggagtacgttatta 22720659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22923682 - 22923646
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22923682 tttgcttataatagtgaccggagggagtacgttatta 22923646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22928335 - 22928299
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22928335 tttgcttataatagtgaccggagggagtacgttatta 22928299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22984614 - 22984578
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22984614 tttgcttataatagtgaccggagggagtacgttatta 22984578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22998202 - 22998166
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtactttatta 37  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  22998202 tttgcttataatagtgaccggagggagtacgttatta 22998166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 24851527 - 24851555
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  24851527 tttgcttataatagtgaccggagggtgta 24851555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29006858 - 29006826
Alignment:
Q  1 tttgcttataatagtgaccggagggtgtacttt 33  Q
    |||||||||||||||||||||| ||||||||||    
T  29006858 tttgcttataatagtgaccggatggtgtacttt 29006826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 33036981 - 33037009
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  33036981 tttgcttataatagtgaccggagggtgta 33037009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 36072593 - 36072565
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  36072593 tttgcttataatagtgaccggagggtgta 36072565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54164836 - 54164808
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54164836 tttgcttataatagtgaccggagggtgta 54164808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 54164930 - 54164958
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54164930 tttgcttataatagtgaccggagggtgta 54164958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 54713121 - 54713093
Alignment:
Q  1 tttgcttataatagtgaccggagggtgta 29  Q
    |||||||||||||||||||||||||||||    
T  54713121 tttgcttataatagtgaccggagggtgta 54713093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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