View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_3 (Length: 801)
Name: NF11901_low_3
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_3 |
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| [»] scaffold0311 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 19 - 719
Target Start/End: Complemental strand, 7166094 - 7165388
Alignment:
| Q |
19 |
agacgagagaaattaacaa-gtaataaacaca--gtttgtttaattttgttcacaaaaatagtcttattacaattgtaataagatataacttgaccaaaa |
115 |
Q |
| |
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||||||||||||||||||| |||| ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
7166094 |
agacgagagaaattaacaaagtaaaaaacacacagtttgttt----ttgttcacaaaagtagtcttattacaattgtaataagataaaacttgaccaaaa |
7165999 |
T |
|
| Q |
116 |
aatagtccacgtgaccatagttatgttcatacatttaaagggtgaatatgcaatggttgggttcaaactctgaattccctatttatttattttaaaggat |
215 |
Q |
| |
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|||||||||||||||||||||||||||||||||| | || |||||||| ||| |||| |||||||||||| |||||||||| |||||||| | | |
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| T |
7165998 |
aatagtccacgtgaccatagttatgttcatacatcgtat---tgtatatgcaagggtcaggtttaaactctgaatttcctatttattcattttaaaaggt |
7165902 |
T |
|
| Q |
216 |
gaaattttagttactaa---gttacttgatnnnnnnnnnnnncttaaacttgtgtatttcataagagcaagtttccaatgacctctacctcttacacaca |
312 |
Q |
| |
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||| ||||||| ||||| |||||||||| ||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7165901 |
gaatttttagtcactaataagttacttgataaaaagaaaa--cttaaccctgtgtatttcataagagcaagtttccaatgacctccacctcttacacaca |
7165804 |
T |
|
| Q |
313 |
tttcaagattgatattgtatggtttttgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaa |
412 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7165803 |
tttcaagattgatattgtatgatttttgttgagtaattgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattaacaa |
7165704 |
T |
|
| Q |
413 |
gagaaatattttgattaaaagatagaaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt---------g |
503 |
Q |
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| T |
7165703 |
gagaaatattttgatcaaaagatagaaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaacttcaaactccac |
7165604 |
T |
|
| Q |
504 |
taactaactattaactatttctaattaagccactaaatgctaaaaaccttaatagtttccgtctagagagatttaacaatgaacgtaacacaaatttact |
603 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
7165603 |
taactaactattaactaattctaattaagccactaaatgctaaaaatcttaatagtttccgcctagagagatttaaccatgaacgtaacacaaatttact |
7165504 |
T |
|
| Q |
604 |
cattaattttttctgatgagaaattgatcatcaaataaaagatccttatgttattagataagacgttaagagggggtctgacatattgtgcgatctattc |
703 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7165503 |
cattaatttttcctgatgagaaattgatcatcaaataaaagatccttatgttattagataagacgttaagagagggtctgacatattgtgcgatctattc |
7165404 |
T |
|
| Q |
704 |
attaattcatgttatc |
719 |
Q |
| |
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|||||||||||||||| |
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| T |
7165403 |
attaattcatgttatc |
7165388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 339 - 502
Target Start/End: Original strand, 31822207 - 31822369
Alignment:
| Q |
339 |
tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag |
437 |
Q |
| |
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|||||||| | |||||||| |||||||||| | ||||||||||| || | ||||||| |||||||| |||| ||| ||| |||||||| ||||||||| |
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| T |
31822207 |
tgttgagtttatgagaatttggagaattag-agccaaaagagccataatggtttgattgagaaaagaa-atcatagaaaaacattttgatcaaaagatag |
31822304 |
T |
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| Q |
438 |
aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt |
502 |
Q |
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|||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
31822305 |
aaaatgagtacatacttgtccatatttataggactaatcagactaaccaattgtgtaactaactt |
31822369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 720 - 782
Target Start/End: Complemental strand, 7165361 - 7165299
Alignment:
| Q |
720 |
tatagatgagaatttcaaggttgtaatgatgtgcttgcagttgcagggagtggtcctttgaag |
782 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7165361 |
tatagatgagaatttcaaggttgtaatgatgtgcttgcagttgcagggagtggtcctttgaag |
7165299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311 (Bit Score: 113; Significance: 8e-57; HSPs: 3)
Name: scaffold0311
Description:
Target: scaffold0311; HSP #1
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 339 - 502
Target Start/End: Complemental strand, 13623 - 13462
Alignment:
| Q |
339 |
tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagataga |
438 |
Q |
| |
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||||||||| ||| |||||||||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||| |
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| T |
13623 |
tgttgagtaattgcgaattcggagaattagaaacaaaaagagccaaaaggctttgattgagaaaagattac--agagaaatattttgatcaaaagataga |
13526 |
T |
|
| Q |
439 |
aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt |
502 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
13525 |
aaatgagtacatactagtccatatttataggactaattagactaaccaattgtgtaactaactt |
13462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 337 - 455
Target Start/End: Complemental strand, 15203 - 15088
Alignment:
| Q |
337 |
tttgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatcaagagaaatattttgattaaaagata |
436 |
Q |
| |
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||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| | ||||||||| |||||||||||||||| |||||||| |
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| T |
15203 |
tttgttgagtaattgagaattcggagaattagaaacaaaaagagccaaaaggctttgattga-aaaagatta--cagagaaatattttgatcaaaagata |
15107 |
T |
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| Q |
437 |
gaaaatgagtacatactag |
455 |
Q |
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||||||||||||||||||| |
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| T |
15106 |
gaaaatgagtacatactag |
15088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0311; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 493 - 546
Target Start/End: Complemental strand, 15075 - 15022
Alignment:
| Q |
493 |
taactaacttgtaactaactattaactatttctaattaagccactaaatgctaa |
546 |
Q |
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|
|||||||||||||||||||||||||||| |||||||| |||||||| |||| |
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| T |
15075 |
taactaacttgtaactaactattaactaaccctaattaacacactaaatcctaa |
15022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 339 - 502
Target Start/End: Complemental strand, 27737994 - 27737832
Alignment:
| Q |
339 |
tgttgagtatttgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaagattatca-agagaaatattttgattaaaagatag |
437 |
Q |
| |
|
|||||||| |||||||||| |||||||||| | ||| ||||||| |||||||||||| ||||||| ||| ||| ||| |||||||| ||||||||| |
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| T |
27737994 |
tgttgagtttttgagaatttggagaattag-agccaatagagccataaggctttgattgagaaaagga-atcgtagaaaaacattttgatcaaaagatag |
27737897 |
T |
|
| Q |
438 |
aaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt |
502 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27737896 |
aaaatgagtacatactagtccttatttataggacttattggactaaccaattgtgtaactaactt |
27737832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 9e-26; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 428 - 508
Target Start/End: Original strand, 20985916 - 20985996
Alignment:
| Q |
428 |
taaaagatagaaaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaacttgtaact |
508 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| ||||| |
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|
| T |
20985916 |
taaaagatagcaaatgagtacatactagtccatatttataggacttaatggactaacaaactgtgtaactaacttctaact |
20985996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 439 - 502
Target Start/End: Complemental strand, 8915580 - 8915517
Alignment:
| Q |
439 |
aaatgagtacatactagtccatatttataggacttattggactaaccaattgtgtaactaactt |
502 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||| |||||| |
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|
| T |
8915580 |
aaatgagtacataatagtccttatttataggacttaatggactaaccaattgtttaattaactt |
8915517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 350 - 404
Target Start/End: Complemental strand, 30372093 - 30372040
Alignment:
| Q |
350 |
tgagaattcggagaattaggaaacaaaagagccaaaaggctttgattaagaaaag |
404 |
Q |
| |
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|||||||| ||||||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
30372093 |
tgagaatttagagaatt-ggaaacaaaagagccataaggctttgattgagaaaag |
30372040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 460 - 502
Target Start/End: Complemental strand, 18776855 - 18776813
Alignment:
| Q |
460 |
tatttataggacttattggactaaccaattgtgtaactaactt |
502 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
18776855 |
tatttataggacttaatggactaaccaattgtgtaactaactt |
18776813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 493 - 531
Target Start/End: Complemental strand, 18776802 - 18776764
Alignment:
| Q |
493 |
taactaacttgtaactaactattaactatttctaattaa |
531 |
Q |
| |
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|||||||||||||||||||||||||||| | |||||||| |
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| T |
18776802 |
taactaacttgtaactaactattaactaatcctaattaa |
18776764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 493 - 555
Target Start/End: Complemental strand, 36472351 - 36472289
Alignment:
| Q |
493 |
taactaacttgtaactaactattaactatttctaattaagccactaaatgctaaaaaccttaa |
555 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||| |||||||| |||| || ||||| |
|
|
| T |
36472351 |
taactaacttgtaactaactattaactaactctaattaacacactaaatcctaagaatcttaa |
36472289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 457
Target Start/End: Complemental strand, 36472585 - 36472548
Alignment:
| Q |
420 |
attttgattaaaagatagaaaatgagtacatactagtc |
457 |
Q |
| |
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|||||||| ||||||| ||||||||||||||||||||| |
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| T |
36472585 |
attttgatcaaaagatggaaaatgagtacatactagtc |
36472548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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