View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_30 (Length: 347)

Name: NF11901_low_30
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_30
NF11901_low_30
[»] chr6 (2 HSPs)
chr6 (35-287)||(17966411-17966652)
chr6 (241-284)||(17961642-17961686)
[»] chr7 (3 HSPs)
chr7 (35-287)||(25031644-25031888)
chr7 (241-288)||(25027357-25027405)
chr7 (310-347)||(41021015-41021052)
[»] chr1 (2 HSPs)
chr1 (35-287)||(46203275-46203519)
chr1 (241-287)||(46207758-46207805)
[»] chr3 (3 HSPs)
chr3 (40-272)||(27000374-27000591)
chr3 (198-288)||(52288503-52288594)
chr3 (241-287)||(52283736-52283783)


Alignment Details
Target: chr6 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 17966411 - 17966652
Alignment:
Q  35 gccattgaaattagcttgttactgaaattaaaccatggaggaaaaatggatgagagatgatgatatacaacgaaaagaacactgtaacaaaaagggcggg 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||            | ||||||||||||| |||    
T  17966411 gccattgaaattagcttgttactgaaattaaactatggaggaaaaatggatgagagatgatgatataca------------cggtaacaaaaagggtggg 17966498  T
Q  135 ataagtgatgggttatgattccaaagcaataaaagattannnnnnnatcagaaaatnnnnnnngaacaaaattttagcttttatgaattgtcatggtttt 234  Q
    ||||||||||||||||||| |||||||||||||||||||       ||||||||||       |||||||||||||||||||| || |||||||||||||    
T  17966499 ataagtgatgggttatgatcccaaagcaataaaagattatttttttatcagaaaataaaaaaagaacaaaattttagcttttacgagttgtcatggtttt 17966598  T
Q  235 attgattgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctc 287  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  17966599 attggttgtgcccaaatatgatgtgttgggcttgtatccaaggaagactttctc 17966652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 284
Target Start/End: Complemental strand, 17961686 - 17961642
Alignment:
Q  241 tgtgcccaaatatgatgtgttgggcttgtatccaa-gaagacttt 284  Q
    ||||| |||||||||||| |||||||||||||||| |||||||||    
T  17961686 tgtgctcaaatatgatgtattgggcttgtatccaaggaagacttt 17961642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 287
Target Start/End: Original strand, 25031644 - 25031888
Alignment:
Q  35 gccattgaaattagcttgttactgaaattaaaccatggaggaaaaatggatgagagatgatgatatacaacgaaaagaacactgtaacaaaaagggcggg 134  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||            | |||||||||||||||||    
T  25031644 gccattgaaattagcttgttactgaaattaaaccatggagaaaaaatggatgagaggtgatgatataca------------cggtaacaaaaagggcggg 25031731  T
Q  135 ataagtgatgggttatgattccaaagcaataaaagattannnnnnn--atcagaaaatnnnnnnn-gaacaaaattttagcttttatgaattgtcatggt 231  Q
    ||||||||||||||||||| |||||| |||||||||||          ||||||||||        ||||||||||||||||||||||| ||||||||||    
T  25031732 ataagtgatgggttatgatcccaaagtaataaaagattttttttttttatcagaaaataaaaaaaagaacaaaattttagcttttatgagttgtcatggt 25031831  T
Q  232 tttattgattgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctc 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25031832 tttattggttgtgcccaaatatgatgtgttgggcttgtatccaaggaagactttctc 25031888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 288
Target Start/End: Complemental strand, 25027405 - 25027357
Alignment:
Q  241 tgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctcg 288  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||||    
T  25027405 tgtgtccaaatatgatgtgttgggcttgtatccaaggaagactttctcg 25027357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 310 - 347
Target Start/End: Complemental strand, 41021052 - 41021015
Alignment:
Q  310 aactatttcttcaacagaacatggattgtagttagctg 347  Q
    |||||||||||||||||||||||||||| |||||||||    
T  41021052 aactatttcttcaacagaacatggattgcagttagctg 41021015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 35 - 287
Target Start/End: Complemental strand, 46203519 - 46203275
Alignment:
Q  35 gccattgaaattagcttgttactgaaattaaaccatggaggaaaaatggatgagagatgatgatatacaacgaaaagaacactgtaacaaaaagggcggg 134  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||            | |||||||||||||||||    
T  46203519 gccattgaaattagcttgttactgaaattaaaccatggagaaaaaatggatgagaggtgatgatataca------------cggtaacaaaaagggcggg 46203432  T
Q  135 ataagtgatgggttatgattccaaagcaataaaagattannnnnnn--atcagaaaatnnnnnnn-gaacaaaattttagcttttatgaattgtcatggt 231  Q
    ||||||||||||||||||| |||||| |||||||||||          ||||||||||        ||||||||||||||||||||||| ||||||||||    
T  46203431 ataagtgatgggttatgatcccaaagtaataaaagattttttttttttatcagaaaataaaaaaaagaacaaaattttagcttttatgagttgtcatggt 46203332  T
Q  232 tttattgattgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctc 287  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  46203331 tttattggttgtgcccaaatatgatgtgttgggcttgtatccaaggaagactttctc 46203275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 241 - 287
Target Start/End: Original strand, 46207758 - 46207805
Alignment:
Q  241 tgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctc 287  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  46207758 tgtgtccaaatatgatgtgttgggcttgtatccaaggaagactttctc 46207805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 5e-44; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 40 - 272
Target Start/End: Complemental strand, 27000591 - 27000374
Alignment:
Q  40 tgaaattagcttgttactgaaattaaaccatggaggaaaaatggatgagagatgatgatatacaacgaaaagaacactgtaacaaaaagggcgggataag 139  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||              ||| ||||||||||    
T  27000591 tgaaattagcttgttactgaaattaaaccatggaggaaaaatggatgagagatgatgacaaacaaagaaaag--------------aagagcgggataag 27000506  T
Q  140 tgatgggttatgattccaaagcaataaaagattannnnnnnatcagaaaatnnnnnnngaacaaaattttagcttttatgaattgtcatggttttattga 239  Q
    ||||| |||||||| |||||||||| ||||||||       || |||||||       ||||||||||||||||||||||| |||||||||||||||||     
T  27000505 tgatgagttatgatcccaaagcaatgaaagattatttttttattagaaaat-aaaaaagaacaaaattttagcttttatgagttgtcatggttttattgg 27000407  T
Q  240 ttgtgcccaaatatgatgtgttgggcttgtatc 272  Q
    || ||||||||||||||||||||||||| ||||    
T  27000406 ttttgcccaaatatgatgtgttgggcttctatc 27000374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 198 - 288
Target Start/End: Original strand, 52288503 - 52288594
Alignment:
Q  198 gaacaaaattttagcttttatgaattgtcatggttttattgattgtgcccaaatatgatgtgttgggcttgtatcc-aagaagactttctcg 288  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52288503 gaacaaaattttagcttttatgagttgtcatggttttattggttgtgcccaaatatgatgtgttgggcttgtatccaaagaagactttctcg 52288594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 287
Target Start/End: Complemental strand, 52283783 - 52283736
Alignment:
Q  241 tgtgcccaaatatgatgtgttgggcttgtatccaa-gaagactttctc 287  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52283783 tgtgcccaaatatgatgtgttgggcttgtatccaaggaagactttctc 52283736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University