View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_42 (Length: 269)
Name: NF11901_low_42
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 247
Target Start/End: Original strand, 20523103 - 20523338
Alignment:
| Q |
12 |
agcagagaatttggatgatcctaaatatgcacattacaaatactggtctaatccacttgaaacaaagtaagtatgtagatttatgaaacacttttgaatg |
111 |
Q |
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| T |
20523103 |
agcagagaatttggatgatcctaaatatgcacattacaaatactggtctaatccacttgaaacaaagtaagcatgtagatttatggaacacttttgaatg |
20523202 |
T |
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| Q |
112 |
atagtgatttgtgcaaattccgctacgctttagcgccggtatttgacaacgctgatactacttttgattatcctattccattcgttaatttgaaaactaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20523203 |
atagtgatttgtgcaaattccgctacgctttagcgccggtatttgacaacgctgatactacttttgattatcctatttcattcgttaatttgaaaactaa |
20523302 |
T |
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| Q |
212 |
atgtgaatttcttgttcagattacctgatgctccga |
247 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
20523303 |
atgtgaatttcttgttcagattacccgatgctccga |
20523338 |
T |
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