View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_47 (Length: 262)
Name: NF11901_low_47
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_47 |
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Alignment Details
Target: chr7 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 24215349 - 24215494
Alignment:
| Q |
1 |
caaacacataaataagttgagaaataaagcaagaaaagtaaaatttgcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaaaatc |
100 |
Q |
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| T |
24215349 |
caaacatataaataagtagagaaataaagcaagaaaagtaaaatttgcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaaaatc |
24215448 |
T |
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| Q |
101 |
tatacataatattaacaacgacacaaacacagaattatcgaaggaccactcg |
152 |
Q |
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| T |
24215449 |
tatacataat------aatgacacaaacacagaattatcgaaggaccactcg |
24215494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 24215553 - 24215586
Alignment:
| Q |
212 |
ccaattttaagacattcactcatatatataacag |
245 |
Q |
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| T |
24215553 |
ccaattttaagacattcactcatatatataacag |
24215586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Original strand, 24224258 - 24224307
Alignment:
| Q |
47 |
gcacaattgaaaaatccttcaaatctgaagttttaataacttcaatccaa |
96 |
Q |
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| T |
24224258 |
gcacaaatgataaatccatcaaatcttaagttttaatgacttcaatccaa |
24224307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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