View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_5 (Length: 616)
Name: NF11901_low_5
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 1 - 599
Target Start/End: Original strand, 27222495 - 27223098
Alignment:
| Q |
1 |
gaaaaggggagtataggatatagccctcacatcagggatttttatatggcacattaaccgaatacatggtcgctctaggttgaatcgttatcccacatca |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222495 |
gaaaaggggagtataggatatagccctcacgtcagggatttttatatggcacattaaccgaatacatggtcgctctaggttgaatcgttatcccacatca |
27222594 |
T |
|
| Q |
101 |
ataccttcacatcaaaggctaattttcgagtatttagtcccctcacaattgtaattattgacacatttgtccttgatatgacctaaattccataggcaaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27222595 |
ataccttcacatcaaaggctaattttcgagtatttagtcccctcacaattgtaattactgacacatttgtccttgatatgacctaaaatccataggcaaa |
27222694 |
T |
|
| Q |
201 |
ttagtctttgatgtgagatcaacgtgtagtgtaggaagtaggaaatgcatattcagttagcgtgccacatcataatccctaacaataaaagttaacat-- |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
27222695 |
ttagtctttgatgtgagatcaacgtgtagtgtaggaagtaggaaatgcatattcagttagcgtgccacatcataatccctaacgataaaagttaacataa |
27222794 |
T |
|
| Q |
299 |
--aatatttcgactgagatgttacaattatagaggtatgtaccaatttacaaaatttaaaaactattttcaccgatgtttacta-tttgatgactaattg |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
27222795 |
ggaatatttcgactgagatgttacaattatagaggtatgtaccaatttacaaaatttaaaaactattttcaccgatctttactattttgatgactaattg |
27222894 |
T |
|
| Q |
396 |
accagtagaatctaaatttagcgtagtttatagacacgtacacatgacatctatccaacaaacgatcaaatcattacaaattcacttcaagaaggtactg |
495 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222895 |
accagtagaatctaaatttagcgtagtttatagacacgtacacatgacatctatccaacaaacgatcaaatcattacaaattcacttcaagaaggtactg |
27222994 |
T |
|
| Q |
496 |
atgaattatttatgcttctaccaaaagatgtactagctgttgtacattattggtttttgcatacctaaatttatttcccatcatgggttttctgggatgt |
595 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27222995 |
atgaattatttatgcttctaccaaaagatgtactagctgttgtacattattggtttttgcatacctaaatttatttcccatcatgggttttctgggatgt |
27223094 |
T |
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| Q |
596 |
attt |
599 |
Q |
| |
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|||| |
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| T |
27223095 |
attt |
27223098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 143 - 205
Target Start/End: Complemental strand, 25893924 - 25893862
Alignment:
| Q |
143 |
tcacaattgtaattattgacacatttgtccttgatatgacctaaattccataggcaaattagt |
205 |
Q |
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||||||||| ||||||||| | |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
25893924 |
tcacaattgcaattattgaaaaatttgtccttgagatgacctaaatttcataggcaaattagt |
25893862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 156 - 206
Target Start/End: Complemental strand, 2505622 - 2505572
Alignment:
| Q |
156 |
tattgacacatttgtccttgatatgacctaaattccataggcaaattagtc |
206 |
Q |
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|||||||| ||||||| |||| |||||| ||||| |||||||||||||||| |
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| T |
2505622 |
tattgacaaatttgtcgttgagatgacccaaatttcataggcaaattagtc |
2505572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 206
Target Start/End: Complemental strand, 31135086 - 31135053
Alignment:
| Q |
173 |
ttgatatgacctaaattccataggcaaattagtc |
206 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
31135086 |
ttgatatgacctaaatttcataggcaaattagtc |
31135053 |
T |
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