View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_55 (Length: 246)

Name: NF11901_low_55
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_55
NF11901_low_55
[»] chr6 (1 HSPs)
chr6 (1-161)||(24418179-24418338)
[»] chr3 (10 HSPs)
chr3 (3-116)||(772236-772348)
chr3 (1-116)||(37758450-37758564)
chr3 (3-113)||(12217253-12217362)
chr3 (3-116)||(2455075-2455187)
chr3 (3-113)||(7428318-7428427)
chr3 (50-116)||(9585939-9586005)
chr3 (50-115)||(764362-764427)
chr3 (1-94)||(7334980-7335072)
chr3 (1-116)||(7443703-7443817)
chr3 (1-117)||(2501394-2501509)
[»] chr7 (1 HSPs)
chr7 (3-92)||(27754889-27754977)
[»] scaffold0760 (1 HSPs)
scaffold0760 (46-114)||(3869-3937)
[»] scaffold1004 (1 HSPs)
scaffold1004 (46-114)||(1375-1443)
[»] scaffold0097 (1 HSPs)
scaffold0097 (1-117)||(33896-34011)


Alignment Details
Target: chr6 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 24418179 - 24418338
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaa 100  Q
    |||||||||||||||||||||| ||| || ||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24418179 cgaatttgggatcagagattaatgaa-ttgaaggacttgcagagacagcgaagttgaaggagtaacttcacgggaagcctacacagaatctcagctacaa 24418277  T
Q  101 gatcgaagggaagagtttttgacggtggtattagggtttcctctctatctggcgccattag 161  Q
    |||||||||||||||||  ||| || | |||||||||||||||  |  |||||||||||||    
T  24418278 gatcgaagggaagagttggtgatggcgatattagggtttcctccatgcctggcgccattag 24418338  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 772236 - 772348
Alignment:
Q  3 aatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaaga 102  Q
    |||||||||||||| |||| || | |||||||||||||| || |||||||| || | ||||||||| || |||||||  ||||||||||| || ||||||    
T  772236 aatttgggatcagatattagagta-ttaaaggacttgcagaggcagcgaagctgcacgagtaactttacaggaagccggcacagaatctccgccacaaga 772334  T
Q  103 tcgaagggaagagt 116  Q
    ||||| ||||||||    
T  772335 tcgaatggaagagt 772348  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 37758450 - 37758564
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaa 100  Q
    |||||||||||||  ||||||||||| || ||||||||||| || || || ||||| | |||||||||||| ||||||||||| ||||| || || || |    
T  37758450 cgaatttgggatccaagattaaagaa-ttcaaggacttgcagaggcatcggagttgtaagagtaacttgacaggaagcctacatagaatttctgccacca 37758548  T
Q  101 gatcgaagggaagagt 116  Q
     |||||| ||||||||    
T  37758549 aatcgaaaggaagagt 37758564  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 113
Target Start/End: Complemental strand, 12217362 - 12217253
Alignment:
Q  3 aatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaaga 102  Q
    |||||||||||||||||||||| |||| |||||||| || || |||||||| |||| ||||||||| || ||||  ||||||| ||| || || ||||||    
T  12217362 aatttgggatcagagattaaag-aattgaaggacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaaga 12217264  T
Q  103 tcgaagggaag 113  Q
    || || |||||    
T  12217263 tcaaacggaag 12217253  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 2455187 - 2455075
Alignment:
Q  3 aatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaaga 102  Q
    |||||||||||||| || | |||| |||||||||||||| || |||||||| || | ||||||||| || |||||||  |||||||| || || || |||    
T  2455187 aatttgggatcagatataagagaa-ttaaaggacttgcagaggcagcgaagctgcacgagtaacttcacaggaagccggcacagaatttccgccacgaga 2455089  T
Q  103 tcgaagggaagagt 116  Q
    ||||| ||||||||    
T  2455088 tcgaatggaagagt 2455075  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 3 - 113
Target Start/End: Original strand, 7428318 - 7428427
Alignment:
Q  3 aatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaaga 102  Q
    |||||||||||||||||||||| |||| ||| |||| || || |||||||| |||| ||||||||| || ||||  ||||||| ||| || || ||||||    
T  7428318 aatttgggatcagagattaaag-aattgaagcacttacagaggcagcgaagctgaatgagtaactttaccggaattctacacaaaatttctgcaacaaga 7428416  T
Q  103 tcgaagggaag 113  Q
    || || |||||    
T  7428417 tcaaacggaag 7428427  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 9585939 - 9586005
Alignment:
Q  50 gaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagagt 116  Q
    ||||||||||||| | ||| || ||||||||||| | ||||||||| || |||||||||||||||||    
T  9585939 gaagttgaaggaggagcttcaccggaagcctacaaaaaatctcagcaaccagatcgaagggaagagt 9586005  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 764362 - 764427
Alignment:
Q  50 gaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaagag 115  Q
    ||||||||||||| | ||| || ||||||||||| | ||||||||| || ||||||||||||||||    
T  764362 gaagttgaaggaggagcttcactggaagcctacagaaaatctcagcaaccagatcgaagggaagag 764427  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 7334980 - 7335072
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcag 94  Q
    ||||||| ||||||||||| | |||| |||||| |||| || ||||| ||||| || | |||||| || || ||||||||||||||||||||||    
T  7334980 cgaattttggatcagagataacagaa-ttaaagaacttacagagacatcgaagctgtacgagtaatttcaccggaagcctacacagaatctcag 7335072  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 7443703 - 7443817
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaa 100  Q
    |||| ||||||||||| ||||||||| || ||| |||| || || || |||||||| | |||||| || || |||||||| || ||||||||||  |  |    
T  7443703 cgaaattgggatcagaaattaaagaa-ttgaagaacttacagaggcaccgaagttgtatgagtaatttcacaggaagcctgcagagaatctcagggagga 7443801  T
Q  101 gatcgaagggaagagt 116  Q
    ||||||||||||||||    
T  7443802 gatcgaagggaagagt 7443817  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 2501509 - 2501394
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaa 100  Q
    ||||||| |||||||| ||||||||| || ||| |||| ||||| || ||||| || |  ||||| || || |||||||| |||||||||||||  | ||    
T  2501509 cgaatttaggatcagaaattaaagaa-ttgaagaacttacaaaggcatcgaagctgtactagtaatttcaccggaagcctgcacagaatctcaggcaaaa 2501411  T
Q  101 gatcgaagggaagagtt 117  Q
    |||||||  ||||||||    
T  2501410 gatcgaaaagaagagtt 2501394  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Complemental strand, 27754977 - 27754889
Alignment:
Q  3 aatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctc 92  Q
    ||||| ||||| |||||||||||| ||||||||||| || || || | ||||||||| |||||||| ||||||||| | |||||||||||    
T  27754977 aattttggatcggagattaaagaa-ttaaaggacttacagaggcatcaaagttgaagtagtaacttcacgggaagcatgcacagaatctc 27754889  T

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Target: scaffold0760 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 3937 - 3869
Alignment:
Q  46 cagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaaga 114  Q
    ||||||| |||||||||||| || ||||||||||||||||| || || || |||||||| || ||||||    
T  3937 cagcgaaattgaaggagtaatttcacgggaagcctacacaggatttcggcaacaagatctaacggaaga 3869  T

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Target: scaffold1004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 1443 - 1375
Alignment:
Q  46 cagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaagatcgaagggaaga 114  Q
    ||||||| |||||||||||| || |||||||| |||||||| || || || |||||||| || ||||||    
T  1443 cagcgaaattgaaggagtaatttcacgggaagtctacacaggatttcggcaacaagatctaacggaaga 1375  T

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Target: scaffold0097 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 34011 - 33896
Alignment:
Q  1 cgaatttgggatcagagattaaagaaattaaaggacttgcaaagacagcgaagttgaaggagtaacttgacgggaagcctacacagaatctcagctacaa 100  Q
    |||| |||||||| ||||| |||||| | |||| |||| || || || || ||||| | |||||| ||||| ||||||||||| |||||||||| ||  |    
T  34011 cgaaattgggatctgagatcaaagaa-tcaaagaacttacagaggcatcggagttgtatgagtaatttgaccggaagcctacatagaatctcaggtatga 33913  T
Q  101 gatcgaagggaagagtt 117  Q
    |||| || |||||||||    
T  33912 gatcaaaaggaagagtt 33896  T

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