View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_59 (Length: 236)

Name: NF11901_low_59
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_59
NF11901_low_59
[»] chr8 (12 HSPs)
chr8 (4-147)||(41504626-41504769)
chr8 (1-132)||(8882618-8882749)
chr8 (2-122)||(28841180-28841300)
chr8 (2-88)||(9255643-9255729)
chr8 (3-89)||(10869730-10869816)
chr8 (2-118)||(6623544-6623660)
chr8 (2-120)||(30731889-30732006)
chr8 (2-122)||(22729263-22729384)
chr8 (2-89)||(13153222-13153308)
chr8 (63-121)||(10614229-10614287)
chr8 (2-88)||(24592516-24592602)
chr8 (88-132)||(24592591-24592635)
[»] chr5 (11 HSPs)
chr5 (1-132)||(19576266-19576397)
chr5 (1-95)||(8911486-8911580)
chr5 (1-124)||(39021660-39021782)
chr5 (43-126)||(4785017-4785100)
chr5 (3-132)||(3052590-3052719)
chr5 (54-131)||(27169699-27169776)
chr5 (64-131)||(15736981-15737048)
chr5 (2-118)||(12448053-12448169)
chr5 (44-118)||(6451904-6451978)
chr5 (3-89)||(8785008-8785094)
chr5 (21-117)||(13760235-13760331)
[»] chr1 (14 HSPs)
chr1 (1-132)||(6078686-6078817)
chr1 (5-129)||(52754621-52754745)
chr1 (1-89)||(44196192-44196280)
chr1 (158-223)||(31265176-31265241)
chr1 (1-88)||(29639931-29640018)
chr1 (2-88)||(14201576-14201662)
chr1 (2-88)||(49868237-49868322)
chr1 (1-120)||(34000362-34000481)
chr1 (2-132)||(49465967-49466097)
chr1 (2-120)||(24903545-24903663)
chr1 (2-87)||(32380409-32380494)
chr1 (14-130)||(9636299-9636415)
chr1 (2-113)||(30054159-30054270)
chr1 (2-88)||(48607475-48607561)
[»] chr7 (13 HSPs)
chr7 (1-132)||(38761562-38761693)
chr7 (1-132)||(29953069-29953200)
chr7 (2-132)||(9225719-9225849)
chr7 (2-128)||(26787081-26787207)
chr7 (2-132)||(43727211-43727341)
chr7 (12-132)||(6113181-6113301)
chr7 (2-122)||(24276851-24276971)
chr7 (9-88)||(38762072-38762151)
chr7 (2-120)||(43216981-43217099)
chr7 (2-130)||(28041985-28042113)
chr7 (1-132)||(47729756-47729881)
chr7 (2-124)||(23181496-23181617)
chr7 (1-55)||(31036036-31036090)
[»] chr3 (17 HSPs)
chr3 (1-130)||(46986544-46986673)
chr3 (1-132)||(47041143-47041274)
chr3 (1-88)||(33776561-33776648)
chr3 (1-88)||(53682139-53682226)
chr3 (42-132)||(16312014-16312104)
chr3 (42-132)||(18488798-18488888)
chr3 (42-132)||(18493008-18493098)
chr3 (1-88)||(16415828-16415915)
chr3 (1-88)||(18516802-18516889)
chr3 (1-132)||(20844425-20844560)
chr3 (1-88)||(30381831-30381918)
chr3 (3-88)||(46279433-46279518)
chr3 (2-85)||(15667244-15667327)
chr3 (2-124)||(24130749-24130872)
chr3 (87-142)||(24989395-24989450)
chr3 (1-61)||(50091304-50091364)
chr3 (2-83)||(3345096-3345177)
[»] chr2 (8 HSPs)
chr2 (1-132)||(31410526-31410656)
chr2 (2-129)||(27925831-27925958)
chr2 (2-128)||(30546889-30547014)
chr2 (5-88)||(31708955-31709038)
chr2 (3-120)||(31162204-31162321)
chr2 (2-85)||(34318613-34318696)
chr2 (34-129)||(45467759-45467854)
chr2 (67-125)||(45262282-45262340)
[»] chr6 (7 HSPs)
chr6 (5-88)||(2226358-2226441)
chr6 (1-132)||(7990451-7990571)
chr6 (2-132)||(30620714-30620845)
chr6 (2-81)||(12648717-12648796)
chr6 (2-88)||(12181383-12181469)
chr6 (11-93)||(23302730-23302810)
chr6 (88-125)||(25338480-25338517)
[»] chr4 (12 HSPs)
chr4 (10-126)||(53693647-53693764)
chr4 (1-88)||(47299845-47299932)
chr4 (10-128)||(10985278-10985396)
chr4 (2-85)||(21402908-21402991)
chr4 (10-95)||(45586611-45586696)
chr4 (1-88)||(31943447-31943534)
chr4 (3-88)||(24105270-24105355)
chr4 (2-118)||(3650660-3650776)
chr4 (3-118)||(50632994-50633109)
chr4 (10-88)||(9578172-9578250)
chr4 (9-130)||(17358660-17358781)
chr4 (1-88)||(3073974-3074061)
[»] scaffold0470 (1 HSPs)
scaffold0470 (2-118)||(12968-13084)
[»] scaffold0726 (1 HSPs)
scaffold0726 (2-88)||(464-550)
[»] scaffold0178 (1 HSPs)
scaffold0178 (22-81)||(16980-17039)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 41504769 - 41504626
Alignment:
Q  4 tttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtga 103  Q
    |||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||  ||| ||    
T  41504769 tttggccatgacagacagatttagctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttcttgtaaatttctcgtagcga 41504670  T
Q  104 tgcaaagaaagtatgggttgagcccgggctagctggggggtaaa 147  Q
    | ||||||| ||| ||||||||||||||||||||||||||||||    
T  41504669 tacaaagaatgtacgggttgagcccgggctagctggggggtaaa 41504626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 8882618 - 8882749
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    ||||||| |||||| ||||||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  8882618 tcatttgtcaatgatagacagatttagctaaggaaatttttcctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttcttgtag 8882717  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
    |||| ||||||||||||| |||||||| ||||    
T  8882718 tgatacaaagaaagtatgtgttgagccagggc 8882749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 28841300 - 28841180
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| |||||||| || |||||||||| |||||||  | |||||||||||||||| |||  ||||||||| ||||||||||| |||||||||| ||||    
T  28841300 catttgacaatgacatacggatttagctacggaaattaactctatagtgacggatttcggttatcactaaaattcaaatttcttataaatttcttgtagt 28841201  T
Q  102 gatgcaaagaaagtatgggtt 122  Q
    ||| |||| ||||||||||||    
T  28841200 gatacaaaaaaagtatgggtt 28841180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 9255729 - 9255643
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||| |||| ||| ||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||    
T  9255729 catttggcaacgacatacaaatttagctacggaaatttgccctatagtgacggattttggctgtcactataagtcaaatttcttgta 9255643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 10869816 - 10869730
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaa 89  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||| | ||||||||||| |||||||||||||    
T  10869816 atttggcaatgacagacagatgtagctacggaaatttgccctatagtaacgaattttggccatcactaaaagttaaatttcttgtaa 10869730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 6623660 - 6623544
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||| ||||||||  |||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| |||     
T  6623660 catttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagc 6623561  T
Q  102 gatgcaaagaaagtatg 118  Q
    ||| |||||||||||||    
T  6623560 gatacaaagaaagtatg 6623544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 30731889 - 30732006
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||||||||||||  |||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| |||     
T  30731889 catttggcaatgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagc 30731988  T
Q  102 gatgcaaagaaagtatggg 120  Q
    ||  |||||||||||||||    
T  30731989 ga-acaaagaaagtatggg 30732006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 122
Target Start/End: Complemental strand, 22729384 - 22729263
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttgg-tcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||| |||||||| ||  ||||||||| |||||||  | | |||||||||||||| || |  ||||||||| ||||| ||||| |||||||||| |||    
T  22729384 catttgacaatgacatacgaatttagctacggaaattaactcaatagtgacggatttcgggttatcactaaaattcaaaattcttataaatttcttgtag 22729285  T
Q  101 tgatgcaaagaaagtatgggtt 122  Q
    |||| |||||||||||||||||    
T  22729284 tgatacaaagaaagtatgggtt 22729263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 89
Target Start/End: Original strand, 13153222 - 13153308
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaa 89  Q
    ||||||||||||||| ||| |||||||||   |||||||||| |||||||||||||||||  ||||||| |||| |||||||||||||    
T  13153222 catttggcaatgacaaacaaatttagctacataaatttgccc-atagtgacggattttggctgtcactataagttaaatttcttgtaa 13153308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 10614287 - 10614229
Alignment:
Q  63 cgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggt 121  Q
    |||||| |||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||    
T  10614287 cgtcacaaaaaatcaaatttgttgtaaatttcttgtagcgatacaaagaaagtatgggt 10614229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 24592516 - 24592602
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| |||||||| | |||| |||||| | |||||  ||||||||||||||||||  |  ||||| | |||||||||||||||||    
T  24592516 catttgacaatgacatatagatgtagctacgaaaattaaccctatagtgacggatttcagctgtcaccataagtcaaatttcttgta 24592602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 24592591 - 24592635
Alignment:
Q  88 aaatttcttatagtgatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||||||||| || |||| |||||||||||||| ||||||||||||    
T  24592591 aaatttcttgtactgatacaaagaaagtatggattgagcccgggc 24592635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 3e-47; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 19576397 - 19576266
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| |  |||    
T  19576397 tcatttggcaatgacagacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttttcgtag 19576298  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
     ||| ||||||||||||||||||| |||||||    
T  19576297 cgatacaaagaaagtatgggttgatcccgggc 19576266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8911580 - 8911486
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttct 95  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  8911580 tcatttggcaatgacaaacaaatttagctacggaaatttgccctatagtgacgaattttggccgtcactaaaagtcaaatttcttgtaaatttct 8911486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 39021660 - 39021782
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||||| |||||||||||||||||||  |     
T  39021660 tcatttggtaatgacagacagatttagctacggaaatttgccctatagtgatggattttggccgttactaaaagtc-aatttcttgtaaatttcttgcaa 39021758  T
Q  101 tgatgcaaagaaagtatgggttga 124  Q
      || |||||||||||||||||||    
T  39021759 aaatacaaagaaagtatgggttga 39021782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 4785100 - 4785017
Alignment:
Q  43 ctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagc 126  Q
    ||||||||||||||||||| ||||||||||| |||||||| |||||||||||||  |||||| |||||||||||||||||||||    
T  4785100 ctatagtgacggattttggccgtcactaaaaatcaaattttttgtaaatttcttgcagtgatacaaagaaagtatgggttgagc 4785017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 132
Target Start/End: Complemental strand, 3052719 - 3052590
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtg 102  Q
    ||||| |||||||||||||||||||||| | |||||| ||||||| ||||||||||||   ||||||| ||||||||||| ||  ||||||||| ||| |    
T  3052719 atttgacaatgacagacagatttagctacgaaaattttccctataatgacggattttgactgtcactataagtcaaattttttacaaatttcttgtagcg 3052620  T
Q  103 atgcaaagaaagtatgggttgagcccgggc 132  Q
    || ||||||||| || |||||| |||||||    
T  3052619 attcaaagaaagcatcggttgaacccgggc 3052590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 27169699 - 27169776
Alignment:
Q  54 gattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccggg 131  Q
    |||||||| |||||||| ||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||||||||||    
T  27169699 gattttggccgtcactataagtcaaatttcttgtaaattgcttgtagcgatacaaagaaagtatgggttgagcccggg 27169776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 64 - 131
Target Start/End: Original strand, 15736981 - 15737048
Alignment:
Q  64 gtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccggg 131  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||| ||||||    
T  15736981 gtcactaaaagtcaaatttcttgtaaatttcttgtagtgatacaaagaaaatataggttgaacccggg 15737048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 12448169 - 12448053
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||| |||||||   |||||||||   ||||||  |||||| ||| ||||||||| |||||| |||| |||||||| ||||||||||||| |||     
T  12448169 catttggcactgacagatgaatttagctacataaatttttcctatattgatggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagc 12448070  T
Q  102 gatgcaaagaaagtatg 118  Q
    ||| |||||||||||||    
T  12448069 gatacaaagaaagtatg 12448053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 118
Target Start/End: Original strand, 6451904 - 6451978
Alignment:
Q  44 tatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatg 118  Q
    |||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| ||| ||| |||||||||||||    
T  6451904 tatattgacggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagcgatacaaagaaagtatg 6451978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 89
Target Start/End: Complemental strand, 8785094 - 8785008
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaa 89  Q
    ||||| |||||||||||||||| ||||| ||||| ||  |  |||||||||||||||| | ||||||| ||||||||||||||||||    
T  8785094 atttgacaatgacagacagattaagctacggaaaattttcacatagtgacggattttgattgtcactataagtcaaatttcttgtaa 8785008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 117
Target Start/End: Original strand, 13760235 - 13760331
Alignment:
Q  21 gatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtat 117  Q
    ||||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| |||||||||| || ||| ||| |||| |||||||    
T  13760235 gatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaatttgttgtagcgatacaaataaagtat 13760331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 8e-45; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 6078686 - 6078817
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||    
T  6078686 tcatttgacaatgacagacagatttagctacggaaatttgccctatagtgacagattttggccgtcactaaaaatcaaatttcttgtaaatttcttatag 6078785  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
     |||  |||||||||| | |||||||||||||    
T  6078786 cgataaaaagaaagtacgagttgagcccgggc 6078817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 5 - 129
Target Start/End: Original strand, 52754621 - 52754745
Alignment:
Q  5 ttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgat 104  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||||| |||   |||||| ||||||||||||||| ||||||||| ||| |||    
T  52754621 ttggcaatgacagacagatttagctacagaaatttgccctatagtgacggattctggctatcactataagtcaaatttcttgcaaatttcttgtagcgat 52754720  T
Q  105 gcaaagaaagtatgggttgagcccg 129  Q
     |||||||||||| |||||||||||    
T  52754721 acaaagaaagtatcggttgagcccg 52754745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 44196280 - 44196192
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaa 89  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44196280 tcatttgacaatgacagacagatttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaatttcttgtaa 44196192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 31265241 - 31265176
Alignment:
Q  158 ttcatgaactctaatttaagacaaattgtgagtttaaatcttggatgaaattgtcatgttttactt 223  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31265241 ttcatgaactctaatttaagacaaattgtgagtttaaatcttagatgaaattgtcatgttttactt 31265176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29639931 - 29640018
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||||||| | |||||||  ||||||||||||||||||| ||||||||||||| |||||| |||||    
T  29639931 tcatttggcaatgacagacagatttagctacgaaaatttgttctatagtgacggattttggccgtcactaaaagttaaattttttgta 29640018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 14201576 - 14201662
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| |||||||| || |||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  14201576 catttgacaatgacatacggatttatctacggaaatttgccctatagtgatggattttggccgtcactaaaagtcaaatttcttgta 14201662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 49868237 - 49868322
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||||||||||| | ||||||||||||||||||||||||||    
T  49868237 catttggcaatgacagacagatttagctacataaatttgcc-tatagtgacggatttttgccgtcactaaaagtcaaatttcttgta 49868322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 34000481 - 34000362
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    ||||||||||||||||||| ||||||||||   |  |||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| |||    
T  34000481 tcatttggcaatgacagacggatttagctacaaatgtttttcctataatgacggattttggccgtcacaaaaaatcaaatttgttgtaaatttcttgtag 34000382  T
Q  101 tgatgcaaagaaagtatggg 120  Q
    |||| |||| ||| ||||||    
T  34000381 tgatacaaataaaatatggg 34000362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 132
Target Start/End: Original strand, 49465967 - 49466097
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| |||||||| ||| | ||||| | | |||||| || |||||||| | |||||||| ||||||| ||||||||||||||| |||||||||  ||     
T  49465967 catttgacaatgacaaacaaaattagcgacgaaaattttccttatagtgatgaattttggttgtcactataagtcaaatttcttgcaaatttcttgcagc 49466066  T
Q  102 gatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||| |||||||||||| |||||||| |||||    
T  49466067 gatacaaagaaagtatcggttgagctcgggc 49466097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 120
Target Start/End: Complemental strand, 24903663 - 24903545
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||| ||| |||| |||||| |||   ||||||  |||||| ||| ||||||||| |||||| |||| |||||||| ||||||||||||| |||     
T  24903663 catttggcattgagagacggatttaactacataaatttttcctatattgatggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagc 24903564  T
Q  102 gatgcaaagaaagtatggg 120  Q
    ||| |||||||||||||||    
T  24903563 gatacaaagaaagtatggg 24903545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 87
Target Start/End: Original strand, 32380409 - 32380494
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgt 87  Q
    ||||||||||||||||||| |||||||||  |||||||| | |||||||||| | |||||  ||||||||||||||| ||||||||    
T  32380409 catttggcaatgacagacaaatttagctacagaaatttgtcatatagtgacgaaatttggctgtcactaaaagtcaattttcttgt 32380494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 14 - 130
Target Start/End: Complemental strand, 9636415 - 9636299
Alignment:
Q  14 acagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaa 113  Q
    ||||||||||||||||| |||||||| ||||||||||||  ||||||   || |    ||||||| ||| || ||||||||||||||| || ||||||||    
T  9636415 acagacagatttagctacggaaatttcccctatagtgacaaattttgactgttatcgtaagtcaatttttttataaatttcttatagttatacaaagaaa 9636316  T
Q  114 gtatgggttgagcccgg 130  Q
    |||| ||||||||||||    
T  9636315 gtataggttgagcccgg 9636299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 30054270 - 30054159
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| |||| ||||||||||||| ||| |||||||| | | ||||||||  ||||||||||| |||| ||||||||||||||| |  ||| || ||||    
T  30054270 catttgacaatcacagacagatttaactacggaaatttactccatagtgacaaattttggtcgtaactacaagtcaaatttcttgaattttttttgtagt 30054171  T
Q  102 gatgcaaagaaa 113  Q
    ||| ||||||||    
T  30054170 gatacaaagaaa 30054159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 48607475 - 48607561
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| |||||| ||  ||||||||||| | || |||  ||||||||||||||||||||  || |||| ||||||||||| |||||    
T  48607475 catttgacaatgatagttagatttagctacgaaattttttcctatagtgacggattttggctgttactacaagtcaaatttattgta 48607561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 38761693 - 38761562
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||| ||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  38761693 tcatttagcaatgatagacagatttagctacggaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttcttgtag 38761594  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
     |||  ||||||| ||||||||||||| ||||    
T  38761593 cgatataaagaaattatgggttgagcctgggc 38761562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 29953069 - 29953200
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||| | |||||||| |||||||| ||| ||||||||| |||||||||| |||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29953069 tcattttgaaatgacagccagatttaactatggaaatttgtcctatagtgatggattttggtcgtcacaaaaagtcaaatttcgtgtaaatttcttatag 29953168  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
      || |||||||||||||||||||||||||||    
T  29953169 caatacaaagaaagtatgggttgagcccgggc 29953200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 9225849 - 9225719
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||||||||||| ||||||| ||| | |||||||||| | |||||||||||||||  ||||||| ||||||||||| ||| ||||||||| ||||    
T  9225849 catttggcaatgacagatagatttaactacgaaaatttgccccaaagtgacggattttggctgtcactacaagtcaaatttgttgaaaatttcttgtagt 9225750  T
Q  102 gatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||| |||||||||||| ||||||||||||||    
T  9225749 gatacaaagaaagtatcggttgagcccgggc 9225719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 128
Target Start/End: Original strand, 26787081 - 26787207
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||  ||| ||| ||||||||||||||| ||||||||| |||     
T  26787081 catttggcaatgacagacaaatttagctatggaaatttgccctatagtgacggattttggctgtctctataagtcaaatttcttgcaaatttcttgtagc 26787180  T
Q  102 gatgcaaagaaagtatgggttgagccc 128  Q
    ||| |||||||| |||  |||||||||    
T  26787181 gatacaaagaaaatatcagttgagccc 26787207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 43727341 - 43727211
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| |||||||| ||||||||   || ||||||||||||||||||||||||||||||  || |||| ||||||||||||||| |||||||||||||     
T  43727341 catttgacaatgacaaacagatttgaatacggaaatttgccctatagtgacggattttggctgttactataagtcaaatttcttgcaaatttcttatagc 43727242  T
Q  102 gatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||| |||||||||||| |||||| |||||||    
T  43727241 gatacaaagaaagtattggttgaacccgggc 43727211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 6113301 - 6113181
Alignment:
Q  12 tgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaaga 111  Q
    ||||| || |||||||||| |||||||| |||||||||||||||||||||   |||||| ||||||||||||||| |||||||   ||| ||| ||||||    
T  6113301 tgacatacggatttagctacggaaatttaccctatagtgacggattttggctatcactacaagtcaaatttcttgcaaatttcgggtagcgatacaaaga 6113202  T
Q  112 aagtatgggttgagcccgggc 132  Q
    |||||| ||||||||| ||||    
T  6113201 aagtatcggttgagcctgggc 6113181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 122
Target Start/End: Original strand, 24276851 - 24276971
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| ||||||||||  ||||| |||| |||||||| ||||||||||| |||||||||   ||||||||| |||| ||| ||||||||||||| ||||    
T  24276851 catttgacaatgacagatggatttcgctacggaaattttccctatagtgaaggattttggctatcactaaaattcaatttttttgtaaatttcttgtagt 24276950  T
Q  102 gatgcaaagaaagtatgggtt 122  Q
    ||| |||||||||| ||||||    
T  24276951 gatacaaagaaagtttgggtt 24276971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 38762151 - 38762072
Alignment:
Q  9 caatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||| | |||||||| ||| |||| | |||||||| ||||||||||||||||||||||||||    
T  38762151 caatgacagacagatttagctacgaaaatttgctctacagtggctgattttggccgtcactaaaagtcaaatttcttgta 38762072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 120
Target Start/End: Original strand, 43216981 - 43217099
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||||||| |||||||| ||||||||||   ||||||  |||||| ||||||||||| |  ||||| |||| |||||||| ||||||||||||| |||     
T  43216981 catttggcactgacagacggatttagctacataaatttttcctatattgacggattttagctgtcacaaaaattcaaatttgttgtaaatttcttgtagc 43217080  T
Q  102 gatgcaaagaaagtatggg 120  Q
    ||| |||||||||||||||    
T  43217081 gatacaaagaaagtatggg 43217099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 2 - 130
Target Start/End: Original strand, 28041985 - 28042113
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| ||||||||||  |||||| ||| ||  |||  | ||||||||  |||||| || |||| ||| ||||||||||| |||| |||||||| || |    
T  28041985 catttgacaatgacagaaggatttaactacggctattaactctatagtgttggatttcggccgtcgctacaagtcaaattttttgttaatttcttgtatt 28042084  T
Q  102 gatgcaaagaaagtatgggttgagcccgg 130  Q
    ||| |||| ||||||||||||||||||||    
T  28042085 gatacaaataaagtatgggttgagcccgg 28042113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47729881 - 47729756
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    ||||||||||| |||| ||  ||||||||| | ||||||||||||||||||| ||| |||  |||||||| |||||||||       ||||||||| ||     
T  47729881 tcatttggcaacgacaaacgaatttagctatgaaaatttgccctatagtgacagatcttgaccgtcactacaagtcaaat------caaatttcttgtaa 47729788  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
    |||| ||||||||| ||||||| || ||||||    
T  47729787 tgatacaaagaaagcatgggttaagtccgggc 47729756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 23181496 - 23181617
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| |||||||||||| ||||| ||| | ||||||| |||||||| ||||||||||| | | |||| |||||||||   ||||||||||||  ||      
T  23181496 catttgacaatgacagacatatttaactacgaaaatttggcctatagtaacggattttggccat-actataagtcaaatcgtttgtaaatttctcgtaac 23181594  T
Q  102 gatgcaaagaaagtatgggttga 124  Q
    ||| |||||||| |||| |||||    
T  23181595 gatacaaagaaaatatgtgttga 23181617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 31036036 - 31036090
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacgga 55  Q
    ||||||| |||||||||||| ||||| ||| |||||||| |||||||||||||||    
T  31036036 tcatttgacaatgacagacatatttaactacggaaattttccctatagtgacgga 31036090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 46986673 - 46986544
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||| ||||||||| ||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||     
T  46986673 tcatttagcaatgacaaacagatttagctacggaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgtaaatttctcgtaa 46986574  T
Q  101 tgatgcaaagaaagtatgggttgagcccgg 130  Q
     |||  ||||||||||||||||||||||||    
T  46986573 cgataaaaagaaagtatgggttgagcccgg 46986544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 47041274 - 47041143
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    ||||||||| |||||||||||||||||| |  ||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||| |||    
T  47041274 tcatttggctatgacagacagatttagcgactgaagtttgccctatagtgacggattttggccgtcactaaaagtctaatttgttgtaaatttcttgtag 47041175  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
     ||| ||||||||||| |||||||||||||||    
T  47041174 cgatacaaagaaagtaggggttgagcccgggc 47041143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 33776648 - 33776561
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||    
T  33776648 tcatttggcaatgacagacagatttagctacggaaattttccctacagtgacggattttggccgtcactaaaagtcaaatttcttgta 33776561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 53682226 - 53682139
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  53682226 tcatttggcaatgacaaacagatttagctacggaaatttgccctatagtgacggattttggctgtcactaaaagtcaaatttcttgta 53682139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 16312104 - 16312014
Alignment:
Q  42 cctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  16312104 cctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatacaaagaaagtatgggttgagctcgggc 16312014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 18488888 - 18488798
Alignment:
Q  42 cctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  18488888 cctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatacaaagaaagtatgggttgagctcgggc 18488798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 132
Target Start/End: Complemental strand, 18493098 - 18493008
Alignment:
Q  42 cctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccgggc 132  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |||||    
T  18493098 cctatagagacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttgtagcgatacaaagaaagtatgggttgagctcgggc 18493008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 16415915 - 16415828
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16415915 tcatttggcaatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgta 16415828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 18516889 - 18516802
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||| ||| | |||||| ||||||||||||||||||||| ||||||||||||||||||||||||||    
T  18516889 tcatttggcaatgacagacagatttacctacgaaaattttccctatagtgacggattttggccgtcactaaaagtcaaatttcttgta 18516802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 20844560 - 20844425
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgcccta----tagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttctt 96  Q
    ||||||| |||||||||||| ||||| ||| ||||||||||||||    |||||||||| ||| | |||||||||||| ||||||||||||||||||||     
T  20844560 tcatttgacaatgacagacaaatttaactacggaaatttgccctacatatagtgacggactttagccgtcactaaaagacaaatttcttgtaaatttctc 20844461  T
Q  97 atagtgatgcaaagaaagtatgggttgagcccgggc 132  Q
     ||| ||| |||||||||||||||||||||| ||||    
T  20844460 gtagcgatacaaagaaagtatgggttgagcctgggc 20844425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30381918 - 30381831
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| ||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||  |||||||||||||||||||||||||    
T  30381918 tcatttagcaatgacagacagatttaactacggaaatttaccctatagtgacgaattttggctgtcactaaaagtcaaatttcttgta 30381831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 46279433 - 46279518
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||| |||| ||||||||||  ||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  46279433 atttggcaatgaaagacggatttagctacagaaatttgccctatagtgacgaattttggccgtaactaaaagtcaaatttcttgta 46279518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 15667327 - 15667244
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttctt 85  Q
    |||||| ||||||||||  |||||||||| | |||||| ||||||||||| |||||||||||||||||||||||||| ||||||    
T  15667327 catttgacaatgacagatggatttagctatgaaaattttccctatagtgatggattttggtcgtcactaaaagtcaattttctt 15667244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 124
Target Start/End: Original strand, 24130749 - 24130872
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttc-ttgtaaatttcttatag 100  Q
    |||||| ||| |||||||| ||||| ||| | |||||| |||| || | ||||| |||||  |||||||||||||||||||| |||||||||||||||      
T  24130749 catttgtcaaagacagacaaatttatctacgaaaattttccctgtattaacggaatttggctgtcactaaaagtcaaatttctttgtaaatttcttatta 24130848  T
Q  101 tgatgcaaagaaagtatgggttga 124  Q
    |||| |||||||||||||||||||    
T  24130849 tgatacaaagaaagtatgggttga 24130872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 24989395 - 24989450
Alignment:
Q  87 taaatttcttatagtgatgcaaagaaagtatgggttgagcccgggctagctggggg 142  Q
    |||||||||| ||||||| ||||||||||||||| | ||||| |||||||||||||    
T  24989395 taaatttcttgtagtgatacaaagaaagtatgggctaagcccaggctagctggggg 24989450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50091364 - 50091304
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttgg 61  Q
    |||||||||||||||  ||| ||||| ||| | |||||||||||||| |||||||||||||    
T  50091364 tcatttggcaatgacgtacatatttacctacgaaaatttgccctatattgacggattttgg 50091304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 83
Target Start/End: Complemental strand, 3345177 - 3345096
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttc 83  Q
    |||||| || |||||||| || ||||||| |||||||  | ||||||||||||||||  |  ||||||| ||||||||||||    
T  3345177 catttgacattgacagacggaattagctacggaaattaactctatagtgacggatttcagctgtcactacaagtcaaatttc 3345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 31410526 - 31410656
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||||||||| ||| ||||||||||||| ||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| ||     
T  31410526 tcatttggcaataaca-acagatttagctacggaaatttgccctatagtgacagattttggccgtcactaaaattcaaatttcttgtaaatttcttgtaa 31410624  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
      || ||||||||| |||||||||||||||||    
T  31410625 caatacaaagaaagcatgggttgagcccgggc 31410656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 129
Target Start/End: Original strand, 27925831 - 27925958
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| ||||||||||| |||||||||| ||||||||||||||||||||||| ||||||| || |||| |||||||||||||| |||||||||| ||      
T  27925831 catttgacaatgacagacggatttagctacggaaatttgccctatagtgacggtttttggttgttactacaagtcaaatttcttctaaatttcttgtaac 27925930  T
Q  102 gatgcaaagaaagtatgggttgagcccg 129  Q
    ||| |||||||| |||||||||||||||    
T  27925931 gatacaaagaaaatatgggttgagcccg 27925958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 30547014 - 30546889
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    ||||| ||||||||||||| |||||||||   ||||||||||| ||||||||||||||||  |||| || |||||||||||||| |||||||||| ||||    
T  30547014 catttcgcaatgacagacaaatttagctacataaatttgccct-tagtgacggattttggctgtcattacaagtcaaatttcttataaatttcttgtagt 30546916  T
Q  102 gatgcaaagaaagtatgggttgagccc 128  Q
    ||| |||| ||||||| ||||||||||    
T  30546915 gatacaaataaagtattggttgagccc 30546889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 31708955 - 31709038
Alignment:
Q  5 ttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||| |  |||||||||| ||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||    
T  31708955 ttggcaatgacataaggatttagctacggaaatttgccctatagtgacggattttggttgtcactacaaatcaaatttcttgta 31709038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 31162204 - 31162321
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtg 102  Q
    ||||||||  |||| |||||||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||||||||| ||| |    
T  31162204 atttggcaccgacaaacagatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagcg 31162303  T
Q  103 atgcaaagaaagtatggg 120  Q
    || |||||||||||||||    
T  31162304 atacaaagaaagtatggg 31162321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 85
Target Start/End: Original strand, 34318613 - 34318696
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttctt 85  Q
    |||||||||||||| ||  |||||| ||| |||||||| | ||||||| |||||||||||||||||||| || |||||||||||    
T  34318613 catttggcaatgactgatggatttaactacggaaattttctctatagtcacggattttggtcgtcactacaaatcaaatttctt 34318696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 129
Target Start/End: Complemental strand, 45467854 - 45467759
Alignment:
Q  34 aaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgagcccg 129  Q
    |||||| | ||||||| |||||||||  |  |||||| || | |||||||||||||||||||   || ||| ||||||||||||||||||||||||    
T  45467854 aaatttacactatagttacggattttaattttcactacaaattaaatttcttgtaaatttctcgaagcgatacaaagaaagtatgggttgagcccg 45467759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 45262282 - 45262340
Alignment:
Q  67 actaaaagtcaaatttcttgtaaatttcttatagtgatgcaaagaaagtatgggttgag 125  Q
    |||| |||||||||||| | ||||||||||||||||||  || |||||||||| |||||    
T  45262282 actataagtcaaatttcatataaatttcttatagtgatataaggaaagtatggattgag 45262340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 88
Target Start/End: Complemental strand, 2226441 - 2226358
Alignment:
Q  5 ttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||    
T  2226441 ttggcaatgacagacagatttagctacggaaatttgcactatagtgacggattttggccgtcactaaaagtcaaatttcttgta 2226358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 7990451 - 7990571
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatag 100  Q
    |||||||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||||| ||||||||||||||           |||||||||||||    
T  7990451 tcatttggcaatgacagatagatttagctacggaaatttgtcctgtagtgacggattttggccgtcactaaaagtc-----------aaatttcttatag 7990539  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
     ||| |||||||||||||||||||||||||||    
T  7990540 cgatacaaagaaagtatgggttgagcccgggc 7990571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 2 - 132
Target Start/End: Complemental strand, 30620845 - 30620714
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaa-atttcttgtaaatttcttatag 100  Q
    ||||| |||| ||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||| | |||||  ||| ||| ||||||||| |||    
T  30620845 catttagcaacgacagacagatttagctacagaaatttgccctatagtgacggattttggttgtcactataggtcaattttttttgcaaatttcttgtag 30620746  T
Q  101 tgatgcaaagaaagtatgggttgagcccgggc 132  Q
      || |||||||||||| ||||||||||||||    
T  30620745 ctatacaaagaaagtatcggttgagcccgggc 30620714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 2 - 81
Target Start/End: Complemental strand, 12648796 - 12648717
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatt 81  Q
    ||||||||||||||||||| ||||||||| ||||||||| ||||| || |||||||||||  ||||||| ||||||||||    
T  12648796 catttggcaatgacagacatatttagctacggaaatttgtcctatggtaacggattttggctgtcactacaagtcaaatt 12648717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 2 - 88
Target Start/End: Original strand, 12181383 - 12181469
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| ||||||||||| |||||||||| ||||||||  |||| ||||||||||||| || ||||||| |||| ||||||||||||    
T  12181383 catttgacaatgacagacggatttagctacggaaatttatcctagagtgacggatttttgttgtcactacaagttaaatttcttgta 12181469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 93
Target Start/End: Complemental strand, 23302810 - 23302730
Alignment:
Q  11 atgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaattt 93  Q
    |||||| ||| |||||||||  ||||||| |||||   |||| |||||||| | ||||||||||||||||||| |||||||||    
T  23302810 atgacaaacaaatttagctacagaaatttaccctaa--tgacagattttggccatcactaaaagtcaaatttcgtgtaaattt 23302730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 125
Target Start/End: Complemental strand, 25338517 - 25338480
Alignment:
Q  88 aaatttcttatagtgatgcaaagaaagtatgggttgag 125  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  25338517 aaatttcttgtagtgatacaaagaaagtatgggttgag 25338480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 53693647 - 53693764
Alignment:
Q  10 aatgacagacagatttagctaaggaaatttgccctatagtgacggatttt-ggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaa 108  Q
    ||||||||||||||||||||| ||||||||| ||||||||||| |||||| ||| ||||||| ||||||||||||||| ||||| ||| ||| ||| |||    
T  53693647 aatgacagacagatttagctacggaaatttgtcctatagtgacagatttttggttgtcactataagtcaaatttcttgcaaattgcttgtagcgatacaa 53693746  T
Q  109 agaaagtatgggttgagc 126  Q
    ||||||||| ||||||||    
T  53693747 agaaagtatcggttgagc 53693764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 47299932 - 47299845
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||||||| |||||||| |||||| ||||||||||||||||||||    
T  47299932 tcatttggcaataacagacagatttagctacgaaaatttgccctatagtgatggattttgctcgtcattaaaagtcaaatttcttgta 47299845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 10985278 - 10985396
Alignment:
Q  10 aatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaaa 109  Q
    ||||||| ||| |||||  || |||||||| |||||||| ||||||||||||   ||||||||||||||||||||||||||||| ||  |||||| ||||    
T  10985278 aatgacatacatatttaattacggaaattttccctatagcgacggattttggctatcactaaaagtcaaatttcttgtaaatttgttgcagtgatacaaa 10985377  T
Q  110 gaaagtatgggttgagccc 128  Q
     ||||||||||||||||||    
T  10985378 aaaagtatgggttgagccc 10985396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 21402991 - 21402908
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttctt 85  Q
    |||||| ||||||||||| ||||||||||   ||||||| |||||||||||||||||||| |||||||||||||||||||||||    
T  21402991 catttgacaatgacagacggatttagctataaaaatttgtcctatagtgacggattttggccgtcactaaaagtcaaatttctt 21402908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 45586611 - 45586696
Alignment:
Q  10 aatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttct 95  Q
    ||||||||||| |||||||||  |||||||||||||||||||| ||||||||  |||||||||| |||||||||||||| ||||||    
T  45586611 aatgacagacatatttagctacagaaatttgccctatagtgacagattttggctgtcactaaaaatcaaatttcttgtagatttct 45586696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 31943534 - 31943447
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||||||| ||| ||||||||| | ||||||| | ||||||||||||| ||||  ||||||| |||||||||||||||||    
T  31943534 tcatttggcaatgacatacaaatttagctacgaaaatttgtcttatagtgacggatattggctgtcactacaagtcaaatttcttgta 31943447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 24105270 - 24105355
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||||||||| |||| |||||||||| |||||||||||||||||||||| || | ||  ||||||| || ||||||||||||||    
T  24105270 atttggcaatgagagacggatttagctacggaaatttgccctatagtgacgtatatcggctgtcactacaaatcaaatttcttgta 24105355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 3650776 - 3650660
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||||||  |||||||  |||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||| ||||| |||     
T  3650776 catttggcatcgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaacttcttgtagc 3650677  T
Q  102 gatgcaaagaaagtatg 118  Q
    ||| |||||||||||||    
T  3650676 gatacaaagaaagtatg 3650660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 50632994 - 50633109
Alignment:
Q  3 atttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtg 102  Q
    |||||||| ||||||||  |||||||||   ||||||  |||||| ||||||||||||| |||||| |||| |||||||| ||||||| ||||| ||  |    
T  50632994 atttggcactgacagacgaatttagctacataaatttttcctatattgacggattttggccgtcacaaaaattcaaatttgttgtaaacttcttgtaacg 50633093  T
Q  103 atgcaaagaaagtatg 118  Q
    || |||||||||||||    
T  50633094 atacaaagaaagtatg 50633109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 88
Target Start/End: Complemental strand, 9578250 - 9578172
Alignment:
Q  10 aatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    ||||||| | ||||||||||| |||||||||| ||||| ||||||||||||   ||||||| |||||||||||||||||    
T  9578250 aatgacaaatagatttagctacggaaatttgctctataatgacggattttgactgtcactataagtcaaatttcttgta 9578172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 17358781 - 17358660
Alignment:
Q  9 caatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagtgatgcaa 108  Q
    ||||||||||   |||||||||  ||||||||||| ||| | ||  |||||||| | || || || ||||||||||| |||||||||| ||| ||| |||    
T  17358781 caatgacagatgaatttagctactgaaatttgccccataataacatattttggttggcaatacaaatcaaatttcttataaatttcttgtagcgatacaa 17358682  T
Q  109 agaaagtatgggttgagcccgg 130  Q
    |||||||||  ||||| |||||    
T  17358681 agaaagtattcgttgaccccgg 17358660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 3074061 - 3073974
Alignment:
Q  1 tcatttggcaatgacagacagatttagctaaggaaattt-gccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    ||||||| |||||| ||||| ||||||||| | |||||| ||||||||||||  ||||||||   |||||| || ||||||||||||||    
T  3074061 tcatttgacaatga-agacaaatttagctacgaaaattttgccctatagtgatagattttggctatcactataaatcaaatttcttgta 3073974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 13084 - 12968
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgtaaatttcttatagt 101  Q
    |||||| || ||||||||  |||||||||   ||||||  |||||| ||||| ||||||| |||||| |||| |||||||| ||||||||||||| |||     
T  13084 catttgtcactgacagacgaatttagctacataaatttttcctatattgacgtattttggccgtcacaaaaattcaaatttgttgtaaatttcttgtagc 12985  T
Q  102 gatgcaaagaaagtatg 118  Q
    ||| |||||||||||||    
T  12984 gatacaaagaaagtatg 12968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0726 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 88
Target Start/End: Complemental strand, 550 - 464
Alignment:
Q  2 catttggcaatgacagacagatttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatttcttgta 88  Q
    |||||| ||||||||||   |||||||||  ||||||| ||||||| | ||||||||||| ||||| ||||||| ||||||||||||    
T  550 catttgacaatgacagatgaatttagctacagaaattttccctatattaacggattttggccgtcagtaaaagttaaatttcttgta 464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 81
Target Start/End: Complemental strand, 17039 - 16980
Alignment:
Q  22 atttagctaaggaaatttgccctatagtgacggattttggtcgtcactaaaagtcaaatt 81  Q
    |||||| || ||||||||| ||| ||||||||||||||||| ||||||  ||||||||||    
T  17039 atttagttacggaaatttgtcctttagtgacggattttggttgtcactgtaagtcaaatt 16980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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