View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_6 (Length: 610)
Name: NF11901_low_6
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_6 |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 552; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 552; E-Value: 0
Query Start/End: Original strand, 19 - 601
Target Start/End: Complemental strand, 44147242 - 44146659
Alignment:
| Q |
19 |
agttgtgtatctaattgaaaactaaatcatacaacaagaggaccctgcattatctgaatagtgcatagatttagcgagagtcaatattcaataacaacaa |
118 |
Q |
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| T |
44147242 |
agttgtgtttctaattgaaaactaaatcatacaacaagaggaccctgcattatcttaatagtgcatagatttagcgagagtcaatattcaataacaacaa |
44147143 |
T |
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| Q |
119 |
atagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagctgtgttggattattgttaat |
218 |
Q |
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| T |
44147142 |
atagattcaattcaactagtacacagatgatggaggatggcatcatgtaatcttacatcttttaattatttaatactagctgtgttggattattgttaat |
44147043 |
T |
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| Q |
219 |
tggttaattatttctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacgggcttggagctcga |
318 |
Q |
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| T |
44147042 |
tggttaattattcctcaatcaatttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacgggcttggagctcga |
44146943 |
T |
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| Q |
319 |
acgcactcagctagcattttctctgccaacctcagctgggaaggcattagcctgtagttatgttgatactggatcgtttttggtgtataaattagtgtaa |
418 |
Q |
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| T |
44146942 |
acgcactcagctagcattttctctgccaacctcagctgggaaggcattagcctgtagttatgttgatactggatcgtttttggtgtataaattagtgtaa |
44146843 |
T |
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| Q |
419 |
ttggggaagagaaacaaatgtggaatcagggagtctcatgtcattgttgaagctggaaatcaagtgtagatagcacgttcttctctttctgtcaggaaat |
518 |
Q |
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| T |
44146842 |
ttggggaagagaaacaaatgtggaatcagggagtctcatgtcattgttgaagctggaaatcaagtgtagatagcacgttcttctctttctgtcgggaaat |
44146743 |
T |
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| Q |
519 |
gctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatg-acttgaaattgtatttctgtgct |
601 |
Q |
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| T |
44146742 |
gctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatgcacttgaaattgtatttctgtgct |
44146659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 480 - 594
Target Start/End: Complemental strand, 44109260 - 44109145
Alignment:
| Q |
480 |
aagtgtagatagcacgttcttctctttctgtcaggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcatatg- |
578 |
Q |
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| T |
44109260 |
aagtgtagatagcacattctcctctttctgttggaaaatggtttggcaaaacatttagtatctgtggtgtaatggtgggtgagtaagagatttcatatgc |
44109161 |
T |
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| Q |
579 |
acttgaaattgtattt |
594 |
Q |
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| T |
44109160 |
acttgaaattgtattt |
44109145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 83; Significance: 5e-39; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 106 - 575
Target Start/End: Complemental strand, 7369 - 6905
Alignment:
| Q |
106 |
tcaataacaacaaatagattcaattcaactagtacacagatgatggaggatggtatcatgtaatcttacatcttttaagtatttaatactagctgtgttg |
205 |
Q |
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| T |
7369 |
tcaatagcaacaaatagattcaatt--agta-tacacagataatggaggatggtgttatgtaataccacatctttgaagcatttcatactagctatgttg |
7273 |
T |
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| Q |
206 |
gattattgttaattggttaattatttctcaatcaa-tttccgtcttgttgattcattttcttttctgtgcaaaatttgaggcaggaaaagtttctgcacg |
304 |
Q |
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| T |
7272 |
aattagtgtt-------taattattcttcaatcaactttccggcttgttgattcattttcttctctgcactaaatttgtggcaggaaaagtttctgcacc |
7180 |
T |
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| Q |
305 |
ggcttggagctcgaacgcactcagctagcattttctctgccaacctcagctgggaaggcattagcctgtagttatgttgatactggatcgtttttggtgt |
404 |
Q |
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| T |
7179 |
gacttggagcttcaacgtgctgagctagcattctctgcaccaacctcagttgggaaggcattagcatgtaattacaccggtactggatcattcttggtgt |
7080 |
T |
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| Q |
405 |
ataaattagtgtaattggggaagagaaacaaatgtggaatcagggagtctcatgtcattgttgaagctggaaatcaag--------tgtagatagcacgt |
496 |
Q |
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| T |
7079 |
ataaatcagtacaatcggagagtagaaatggctgtggaattgaggagtctcgtgtca---ttgaagctggaaatcaagagtagaaatgtcgatagcatgt |
6983 |
T |
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| Q |
497 |
tcttctctttctgtcaggaaatgctttggcaaaacatttagtacctgtggtgtagtggcgggtgagtaagagatttcat |
575 |
Q |
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| T |
6982 |
tcttctctttccgtcagaaaat-attaggcaacccatttagttccggtggtgtgatggcggttgagtaacagatgtcat |
6905 |
T |
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