View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_65 (Length: 227)
Name: NF11901_low_65
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_65 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 1203934 - 1204154
Alignment:
| Q |
7 |
cttagtttcccactcctaacaaaaactgctcttaattggtttgttaaaaatcttcagtctttatttataattgcgcctctacttcaaatcattttcattc |
106 |
Q |
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| T |
1203934 |
cttagtttcccactcctaacaaaaactgctcttaattggtttgttaaaaatcttcagtctttatttataattgcgcctctacttcaaagcattttcattc |
1204033 |
T |
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| Q |
107 |
gacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctttgcatttgaaagaaataacttaccgtggctgtggtag |
206 |
Q |
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| T |
1204034 |
gacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctttgcatttgaaagaaataacttaccgtggctctggtag |
1204133 |
T |
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| Q |
207 |
accgcaagacatttttaatac |
227 |
Q |
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| T |
1204134 |
accgcaagacatttttaatac |
1204154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 70 - 207
Target Start/End: Original strand, 1200826 - 1200963
Alignment:
| Q |
70 |
tttataattgcgcctctacttcaaatcattttcattcgacgtgacattcatgtgccttataatgatcccaactactcttgtatctctttttgtgattctt |
169 |
Q |
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| T |
1200826 |
tttataattgcacctctacttcaaagcattttcattcaacgtgacatttgcatgccttatgagggtatcaacttctcttgtatttctttctgtgattctt |
1200925 |
T |
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| Q |
170 |
tgcatttgaaagaaataacttaccgtggctgtggtaga |
207 |
Q |
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| T |
1200926 |
tgcgtttgaaagaaataacttaccttggttttggtaga |
1200963 |
T |
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