View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11901_low_70 (Length: 206)

Name: NF11901_low_70
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11901_low_70
NF11901_low_70
[»] chr1 (3 HSPs)
chr1 (2-182)||(31316382-31316563)
chr1 (56-182)||(31315492-31315619)
chr1 (56-120)||(42879668-42879732)
[»] chr5 (2 HSPs)
chr5 (49-141)||(34234456-34234549)
chr5 (56-120)||(18924595-18924659)
[»] chr7 (1 HSPs)
chr7 (56-120)||(21571237-21571301)
[»] scaffold0740 (1 HSPs)
scaffold0740 (49-120)||(3209-3280)
[»] chr3 (2 HSPs)
chr3 (60-120)||(34056968-34057028)
chr3 (56-120)||(2874190-2874254)
[»] chr2 (3 HSPs)
chr2 (56-120)||(25424363-25424427)
chr2 (56-120)||(27155869-27155932)
chr2 (56-94)||(21546912-21546950)
[»] chr6 (2 HSPs)
chr6 (56-120)||(32983476-32983540)
chr6 (56-118)||(17865876-17865938)
[»] scaffold0735 (1 HSPs)
scaffold0735 (56-120)||(3308-3372)
[»] chr8 (1 HSPs)
chr8 (59-99)||(25115402-25115442)


Alignment Details
Target: chr1 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 2 - 182
Target Start/End: Complemental strand, 31316563 - 31316382
Alignment:
Q  2 caaactccacgaaatggatattatgcaatttttcaccacatgtctaatgcgaataagatttccttcttagactaggttgaattttgatgataataaacgc 101  Q
    |||||||||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||| ||    
T  31316563 caaactccacgagatggatattatgcaaattttcacaacatgtctaatgcaaataagattttcttcttagacttggttgaattttgatgataacaaatgc 31316464  T
Q  102 tcatcacaaaagaag-aaaatatgtaggcgtaagatgaagaaacttggattgtgtagttaaataattgtaagtatggtcttt 182  Q
    ||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31316463 tcatcacaaaagaagaaaaatatgtaggcacaagatgaagaaacttggattgtatagttaaataattgtaagtatggtcttt 31316382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 56 - 182
Target Start/End: Complemental strand, 31315619 - 31315492
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaa-atatgtaggcgtaagatgaagaaacttggattgtg 154  Q
    |||||||||||||| |||| ||||   |||||||||||| |||   |||||| ||||||||||| |||||||| |  |||||||||| ||||| ||||||    
T  31315619 aagatttccttcttggacttggttaggttttgatgataacaaagattcatcataaaagaagaaatatatgtagacacaagatgaagacacttgaattgtg 31315520  T
Q  155 tagttaaataattgtaagtatggtcttt 182  Q
    |||||||||||||  |||||||||||||    
T  31315519 tagttaaataatttgaagtatggtcttt 31315492  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 42879668 - 42879732
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    |||||| |||||||||| | |||||  |||||| ||||| |||| | ||||||||||||||||||    
T  42879668 aagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaagaagaaaa 42879732  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 34234456 - 34234549
Alignment:
Q  49 tgcgaataagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa-tatgtaggcgtaagatgaaga 141  Q
    |||||| |||||||| |||||||||| || ||| |||||||||||| |||| | |||||||||||||||||| |||| ||||  ||||||||||    
T  34234456 tgcgaagaagatttctttcttagacttggctgagttttgatgataacaaactcacatcacaaaagaagaaaactatggaggcacaagatgaaga 34234549  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 18924595 - 18924659
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||| ||||||||||| |  |||||||||||||||| |||| | ||||||||||||||||||    
T  18924595 aagattttcttcttagacttgactgaattttgatgataacaaactcacatcacaaaagaagaaaa 18924659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 21571301 - 21571237
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||||||||||||||| |  ||||||||||||| ||||||| | ||||||||||||||||||    
T  21571301 aagatttccttcttagacttgactgaattttgatgacaataaactcacatcacaaaagaagaaaa 21571237  T

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Target: scaffold0740 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0740
Description:

Target: scaffold0740; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 49 - 120
Target Start/End: Original strand, 3209 - 3280
Alignment:
Q  49 tgcgaataagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    |||||| ||||||||||||||||| | || |||| ||||||||||| |||| | ||||||||||||||||||    
T  3209 tgcgaagaagatttccttcttagatttggctgaactttgatgataacaaactcacatcacaaaagaagaaaa 3280  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 34057028 - 34056968
Alignment:
Q  60 tttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||||||||| | |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  34057028 tttccttcttagatttggttgagttttgatgataataaactcacatcataaaagaagaaaa 34056968  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 2874254 - 2874190
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||| ||||||||||| || ||| ||| |||||||| |||| | ||||||||||||||||||    
T  2874254 aagattttcttcttagacttggatgagtttcgatgataacaaactcacatcacaaaagaagaaaa 2874190  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 25424427 - 25424363
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||| ||||||||||| || ||| |||||||||||| |||| | ||||||||||||||||||    
T  25424427 aagattttcttcttagacttggctgagttttgatgataacaaactcacatcacaaaagaagaaaa 25424363  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 27155869 - 27155932
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||||||||||||||| || ||  |||||||||||| |||| | ||||||||||||||||||    
T  27155869 aagatttccttcttagacttggctgggttttgatgataa-aaactcacatcacaaaagaagaaaa 27155932  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 21546950 - 21546912
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataa 94  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  21546950 aagatttccttcttagatttggttgaattttgatgataa 21546912  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 32983476 - 32983540
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    ||||||||||||||||||| |  |||||||||||||||| ||||   ||| ||||||||||||||    
T  32983476 aagatttccttcttagacttgactgaattttgatgataacaaacttacataacaaaagaagaaaa 32983540  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 17865876 - 17865938
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaa 118  Q
    ||||||||||||||||||| ||||   |||||||||||| |||| |  |||||||||||||||    
T  17865876 aagatttccttcttagacttggtttggttttgatgataacaaactcatatcacaaaagaagaa 17865938  T

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Target: scaffold0735 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0735
Description:

Target: scaffold0735; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 3372 - 3308
Alignment:
Q  56 aagatttccttcttagactaggttgaattttgatgataataaacgctcatcacaaaagaagaaaa 120  Q
    |||||| |||||||||| | |||||  |||||| ||||| |||| | ||||||||||||||||||    
T  3372 aagattcccttcttagatttggttgggttttgacgataacaaactcacatcacaaaagaagaaaa 3308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 25115442 - 25115402
Alignment:
Q  59 atttccttcttagactaggttgaattttgatgataataaac 99  Q
    |||||||||||||||| |||||| |||||||||||| ||||    
T  25115442 atttccttcttagacttggttgagttttgatgataaaaaac 25115402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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