View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11901_low_9 (Length: 549)
Name: NF11901_low_9
Description: NF11901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11901_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 45 - 280
Target Start/End: Complemental strand, 373642 - 373399
Alignment:
| Q |
45 |
taattcaaaattaattaatgtcaaaaaagaatcaaacata--------aactcaataattttgtcgtaaataaacagagtctcgctctgaaaaaccctaa |
136 |
Q |
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| T |
373642 |
taattcaaaattaattaatgtcaaaaaagaatcaaacatataattataaactcaataattttgtcgtaaataaacagagtctcgctctgaaaaaccctaa |
373543 |
T |
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| Q |
137 |
acccttgtaagcaaaaatctgaacgaagaagaaagcagtatgggaaaaattcctccttcatttcgatctgcactctcaaaccctaatttgattcaccgtt |
236 |
Q |
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| T |
373542 |
acccttgtaagcaaaaatctgaacgaagaagaaagcagtatgggaaaaattcctccttcatttcgatctgcactctcaaaccctaatttgattcaccgtt |
373443 |
T |
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| Q |
237 |
catcttcattgattccttcttctcccaaaccccatcattttcct |
280 |
Q |
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| T |
373442 |
catcttcattgattccttcttctcccaaaccccatcattttcct |
373399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 347 - 533
Target Start/End: Complemental strand, 373332 - 373146
Alignment:
| Q |
347 |
gtttctgtattcaaatccccaaatctccaagaagccaaaagcatcttcaattccttcgtcaacagttccaatgctcctattgattcccgttttcataatt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
373332 |
gtttctgtattcaaatccccaaatctccaagaagccaaaagcatcttcaattccttcgtcaacagttccaatgctcctattgattcccgttttcataatt |
373233 |
T |
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| Q |
447 |
cccttcttcaatcctacgcttcaatttccaccattaacgattccattgcttttcttcgtcatatgacaaagacccatccttcattct |
533 |
Q |
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| T |
373232 |
cccttcttcaatcctacgcttcaatttccaccattaacgattccattgcttttcttcgtcatatgacaaagacccatccttcattct |
373146 |
T |
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