View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_1 (Length: 916)
Name: NF11902_high_1
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 486 - 902
Target Start/End: Original strand, 3825192 - 3825601
Alignment:
| Q |
486 |
atatgaacctataagcatttttaaaggttctctgaaaaactatatttaaaggtgtacgttgttttcaattgatatattcnnnnnnnnnnnnnnaaaaagg |
585 |
Q |
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| T |
3825192 |
atatgaacctataactatttttaaaggttctctgaaaaactatatttaaaggtgtacgtagttttcaattgatatattctttttttt------aaaaagg |
3825285 |
T |
|
| Q |
586 |
aaaatgaaatatattaaatcaaatcgagatatctacctacataaagagtgcaaggttagggttatggctctaaagtctttacaagctggaatacaatgca |
685 |
Q |
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| T |
3825286 |
aaaatgaaatatattaaatcaaatcgagatctctacctacacaaagagtgcaaggttagggttatggctctaaagtctttacaagctggaatacaatgca |
3825385 |
T |
|
| Q |
686 |
aacaccaacaagaaaaacggcaaagcactagcttggttaaacttgatgacttttagctattggtcccatataaaattgatgtgattttaattaaagacgg |
785 |
Q |
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| T |
3825386 |
aacaccaacaagaaaaacggcaaagcactagcttggttaaacttgatgacttttagctattggtcccatatgaaattgatgtgattttaattaaagacgg |
3825485 |
T |
|
| Q |
786 |
gtcagatttattccaaaataacattccgtagcctatagatgcaattttggtatcacatcttatgtcctaattttggtataatggctcccggccaagggca |
885 |
Q |
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| T |
3825486 |
atcagatttattccaaaataacattccgtagcctatagatgcaattttggtatcacatcttatgtcctaattttggtataatggct-ccggccaagggca |
3825584 |
T |
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| Q |
886 |
caccacctagtctatcc |
902 |
Q |
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| T |
3825585 |
caccacctagtctatcc |
3825601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 3825958 - 3825588
Alignment:
| Q |
17 |
agtgctttgtgcttagaatttgggttattaatcccatcatcttcctttaaaaaactgagctattaaannnnnnnng--------aatgtataactctctc |
108 |
Q |
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| T |
3825958 |
agtgctttgtgcttagaatttgggttattaatgc-atcatcttcctttaaaaaactgagctgttaaacaattttttttttttttaatgtataactctct- |
3825861 |
T |
|
| Q |
109 |
tgagaacgatcatctataatacaggataatagcgcacacatgagaatcattccaacttttaatcacaacttgttcacccaatccaaattcatcgaccaga |
208 |
Q |
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| T |
3825860 |
-gagaacgatcatctataatacaggataatagcgcacacatgagaatcattccaacttttaatcacaacttgttcacccgatccaaattcatcgaccaga |
3825762 |
T |
|
| Q |
209 |
tttttgtttttgactccttagaaattaacatacaataatacaggcctatagaatagttggcgttaattatcagtaacatggcttgtcaaaaaagtttaat |
308 |
Q |
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| T |
3825761 |
tttttgtttttgactccttagaaattaacatacaataatacaagcctatagaatagttggcgttaattatcagtaacatggcttgtcaaaaaagtttaat |
3825662 |
T |
|
| Q |
309 |
tccattataaattaacatatgtcnnnnnnngttccattaatatgtaaactttatccaaatggatataataggtg |
382 |
Q |
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| T |
3825661 |
tccattataaattaacatatgtctttttttgttccattaatatgtaaactttatccaaatggatagactaggtg |
3825588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 369 - 477
Target Start/End: Original strand, 3825105 - 3825213
Alignment:
| Q |
369 |
ggatataataggtgaggagaaactatagttgattatgctatgatgaacgtgactgttgacaaattgcaagataaaaccacgctttaaatatgaacctata |
468 |
Q |
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| T |
3825105 |
ggatataataggtgaggagaaactatagttgattatgctatgatgaacgtgactgttgacaaattgcaagataaaaccacgctttaaatatgaacctata |
3825204 |
T |
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| Q |
469 |
actattttt |
477 |
Q |
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| T |
3825205 |
actattttt |
3825213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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