View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_high_15 (Length: 459)

Name: NF11902_high_15
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_high_15
NF11902_high_15
[»] chr2 (8 HSPs)
chr2 (1-418)||(34101954-34102371)
chr2 (57-151)||(33941901-33941995)
chr2 (57-116)||(9477944-9478003)
chr2 (57-139)||(43984999-43985081)
chr2 (74-151)||(34652020-34652097)
chr2 (57-117)||(1810657-1810716)
chr2 (72-144)||(1939323-1939395)
chr2 (114-154)||(3070511-3070551)
[»] chr4 (7 HSPs)
chr4 (58-151)||(2996566-2996659)
chr4 (65-143)||(6987733-6987811)
chr4 (79-147)||(488114-488182)
chr4 (58-142)||(11264294-11264378)
chr4 (114-154)||(17976804-17976844)
chr4 (69-117)||(30668384-30668432)
chr4 (58-126)||(36722678-36722746)
[»] chr5 (1 HSPs)
chr5 (69-154)||(40205055-40205140)
[»] chr1 (5 HSPs)
chr1 (57-151)||(51695478-51695573)
chr1 (57-154)||(15515533-15515630)
chr1 (58-145)||(5756676-5756763)
chr1 (69-145)||(15437967-15438043)
chr1 (79-151)||(35925704-35925776)
[»] chr6 (5 HSPs)
chr6 (57-151)||(20368164-20368258)
chr6 (74-145)||(7148675-7148746)
chr6 (162-204)||(733100-733142)
chr6 (69-146)||(8035137-8035214)
chr6 (107-151)||(8147050-8147094)
[»] chr8 (2 HSPs)
chr8 (58-154)||(11415147-11415243)
chr8 (72-139)||(20672757-20672824)
[»] chr3 (1 HSPs)
chr3 (105-146)||(38319000-38319041)


Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 34101954 - 34102371
Alignment:
Q  1 taagtgcttatgtataagctattcctatgagataaaataaagtcaaacgnnnnnnngtataagttattagttgtttttataagctatcctggatagttta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  34101954 taagtgcttatgtataagctattcctatgagataaaataaagtcaaacgtttttttgtataagttattagttgtttttataagctatcctggatagttta 34102053  T
Q  101 cgagaataagttgaaaatagattatgtacatgttataagttgtttttataaactgactctgataagtgcttatggcagtagataagctcaaattaactaa 200  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  34102054 cgagaataagttgaaaatagagtatgtacatgttataagctgtttttataaactgactctgataagtgcttatggcagtaggtaagctcaaattaactaa 34102153  T
Q  201 tttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggtaatttttgtagaatatgattctgagattatgttataa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102154 tttcaaacaagccataaacactagtaattacttctttaaatagatttaggttttgattttggtaatttttgtagaatatgattctgagattatgttataa 34102253  T
Q  301 ttggaacagatttagtgttgttgattggttatttatgattatatgatcatttgataggcgttctactgttctacatattgtgcgaaccagactatacatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34102254 ttggaacagatttagtgttgttgattggttatttatgattatatgatcatttgataggcgttctactgttctacatattgtgcgaaccagactatacatc 34102353  T
Q  401 tttgggatataggttttg 418  Q
    ||||||||||||||||||    
T  34102354 tttgggatataggttttg 34102371  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 33941901 - 33941995
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    ||||||||||| | ||||||| |||||||||| |||| |||||| || ||||||||||||  || ||||| || ||| |||||||||||| ||||    
T  33941901 gtataagttataacttgttttcataagctatcttggagagtttatgataataagttgaaagcagcttatgaacttgtcataagttgttttcataa 33941995  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 9477944 - 9478003
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaa 116  Q
    ||||||||||| ||||||||| ||||||||||||||| || ||| || ||||||||||||    
T  9477944 gtataagttataagttgttttcataagctatcctggagaggttatgaaaataagttgaaa 9478003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 139
Target Start/End: Complemental strand, 43985081 - 43984999
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 139  Q
    |||||| |||| ||||||||| |||||||||| || | || ||| || |||||| ||||||||||| ||| |||| |||||||    
T  43985081 gtataaattataagttgttttcataagctatcttgaagagcttatgaaaataagctgaaaatagataatgaacatattataag 43984999  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 151
Target Start/End: Complemental strand, 34652097 - 34652020
Alignment:
Q  74 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    |||| |||||||||| |||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||| |||||    
T  34652097 ttttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtttctataa 34652020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 117
Target Start/End: Original strand, 1810657 - 1810716
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaa 117  Q
    ||||||||||| |||||||||||||||||||| || | |||||| || |||||| ||||||    
T  1810657 gtataagttat-agttgtttttataagctatcttgaagagtttatgaaaataagctgaaaa 1810716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 1939395 - 1939323
Alignment:
Q  72 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtt 144  Q
    |||||| ||||||||| ||||| || ||| |  ||||||||||||| || ||||| |||||| ||||||||||    
T  1939395 tgttttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagttgtt 1939323  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 3070551 - 3070511
Alignment:
Q  114 aaaatagattatgtacatgttataagttgtttttataaact 154  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  3070551 aaaatagtttatagacatgttataagttgtttttataaact 3070511  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 2996566 - 2996659
Alignment:
Q  58 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    |||||||||| ||||||||| |||||||||| |||| ||  || || ||||||||||||| || ||||| |||||| |||||||||||| ||||    
T  2996566 tataagttataagttgttttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagttgttttcataa 2996659  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 6987811 - 6987733
Alignment:
Q  65 tattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgt 143  Q
    |||||||| ||||| || ||||||||||| || ||| |  |||||||||||||||| ||||| |||||| |||||||||    
T  6987811 tattagttatttttttacgctatcctggagagcttatggaaataagttgaaaatagtttatggacatgtcataagttgt 6987733  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 488182 - 488114
Alignment:
Q  79 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttttt 147  Q
    |||||||||| |||| | ||||||  |||||| |||||| || ||||| |||||| |||||||||||||    
T  488182 ataagctatcttggagaatttacgtaaataagatgaaaacagcttatgcacatgtcataagttgttttt 488114  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 142
Target Start/End: Original strand, 11264294 - 11264378
Alignment:
Q  58 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttg 142  Q
    |||| ||||| ||||||||| |||||| ||||| || || ||| |  ||||||||||||| || ||||| |||||| ||||||||    
T  11264294 tatatgttataagttgttttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagttg 11264378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 17976804 - 17976844
Alignment:
Q  114 aaaatagattatgtacatgttataagttgtttttataaact 154  Q
    ||||||| ||||  |||||||||||||||||||||||||||    
T  17976804 aaaatagtttatagacatgttataagttgtttttataaact 17976844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 117
Target Start/End: Complemental strand, 30668432 - 30668384
Alignment:
Q  69 agttgtttttataagctatcctggatagtttacgagaataagttgaaaa 117  Q
    |||||||||||||||||||| ||||||||||| || | |||| ||||||    
T  30668432 agttgtttttataagctatcttggatagtttatgaaattaagctgaaaa 30668384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 36722746 - 36722678
Alignment:
Q  58 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatg 126  Q
    |||||||||| ||||||||| ||||| ||||||| | || ||| || |||||| | |||||||||||||    
T  36722746 tataagttataagttgttttgataagttatcctgaagagcttatgaaaataagcttaaaatagattatg 36722678  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 40205140 - 40205055
Alignment:
Q  69 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 154  Q
    ||||||||| ||||||||||||||| || |||    |||||| |||||| |||||||| |||||||||||| ||||| ||||||||    
T  40205140 agttgttttcataagctatcctggagagcttatagaaataagctgaaaacagattatggacatgttataagctgtttatataaact 40205055  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 51695573 - 51695478
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtac-atgttataagttgtttttataa 151  Q
    ||||||||||| || |||||| |||||||||| |||| | |||| || |||||| ||||||||| ||||| || |||| ||||||||||| |||||    
T  51695573 gtataagttatcagatgttttcataagctatcttggagaatttatgaaaataagctgaaaatagcttatgaacaatgtgataagttgtttatataa 51695478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 15515533 - 15515630
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 154  Q
    ||||||| ||| ||||||||| ||||| |||| ||||||| ||| |  ||||| ||||||||||  |||  |||||| |||||||||||| |||||||    
T  15515533 gtataagctataagttgttttcataagttatcatggatagcttatggaaataaattgaaaatagcgtattgacatgtcataagttgttttcataaact 15515630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 58 - 145
Target Start/End: Complemental strand, 5756763 - 5756676
Alignment:
Q  58 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 145  Q
    ||||| |||| |||||||||  ||||||| |||||| || |||| | |||||||||||||||  |||| ||||| ||||||| |||||    
T  5756763 tataaattataagttgttttcgtaagctagcctggagagcttaccaaaataagttgaaaatatcttatatacatattataaggtgttt 5756676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 15437967 - 15438043
Alignment:
Q  69 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 145  Q
    ||||||||| ||| |||||||| || ||||||||  |||||| ||||| ||  ||||| |||||| |||||||||||    
T  15437967 agttgttttcataggctatcctcgagagtttacggaaataagctgaaagtaacttatgaacatgtcataagttgttt 15438043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 151
Target Start/End: Original strand, 35925704 - 35925776
Alignment:
Q  79 ataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    |||||||||| |||| |||||| |  ||||||||||||| || ||||| |||||| ||||| |||||| ||||    
T  35925704 ataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataagctgttttcataa 35925776  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 20368258 - 20368164
Alignment:
Q  57 gtataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    |||| |||||| ||||||||| ||||||| || |||| |  ||| || |||||||||||| ||| ||||| |||||| |||||||||||| ||||    
T  20368258 gtatgagttataagttgttttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagttgttttcataa 20368164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 7148675 - 7148746
Alignment:
Q  74 tttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgttt 145  Q
    |||| |||||||| |||||| || ||| || |||||||||||||||| ||||| ||| || |||||||||||    
T  7148675 ttttaataagctaccctggagagcttatgaaaataagttgaaaatagcttatggacaagtcataagttgttt 7148746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 733142 - 733100
Alignment:
Q  162 ataagtgcttatggcagtagataagctcaaattaactaatttc 204  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||    
T  733142 ataagtgcttatggtagtagataagctcaaataaaccaatttc 733100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 146
Target Start/End: Complemental strand, 8035214 - 8035137
Alignment:
Q  69 agttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttt 146  Q
    ||||||||| ||||| |||||| || || |||||| ||||||||||||| |  |||||  ||||| ||||||||||||    
T  8035214 agttgttttcataagttatcctagaaagcttacgaaaataagttgaaaacaagttatgaccatgtcataagttgtttt 8035137  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 8147094 - 8147050
Alignment:
Q  107 taagttgaaaatagattatgtacatgttataagttgtttttataa 151  Q
    |||||||||||||| ||||| | ||||||||||||||||| ||||    
T  8147094 taagttgaaaatagcttatgcatatgttataagttgttttcataa 8147050  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 11415147 - 11415243
Alignment:
Q  58 tataagttattagttgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataagttgtttttataaact 154  Q
    ||||||||||  | |||||| |||||||||||| || |||||  || |||||| ||| ||||| ||||| |||||||||||| |||||  |||||||    
T  11415147 tataagttatacgctgttttcataagctatcctagagagtttgtgaaaataagctgagaatagcttatggacatgttataagctgtttccataaact 11415243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 20672757 - 20672824
Alignment:
Q  72 tgtttttataagctatcctggatagtttacgagaataagttgaaaatagattatgtacatgttataag 139  Q
    |||||||||||||||||||||| || ||| || |||||| |||||| || ||||| |||||| |||||    
T  20672757 tgtttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 146
Target Start/End: Original strand, 38319000 - 38319041
Alignment:
Q  105 aataagttgaaaatagattatgtacatgttataagttgtttt 146  Q
    |||||| ||||||||| ||||| |||||||||||||||||||    
T  38319000 aataagctgaaaatagcttatgaacatgttataagttgtttt 38319041  T

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