View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_21 (Length: 393)
Name: NF11902_high_21
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_21 |
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| [»] scaffold0191 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 24002 - 23646
Alignment:
| Q |
19 |
cacagaagcaggtgagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaatttatgcaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24002 |
cacagaagcaggtgagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaatttatgcaa |
23903 |
T |
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| Q |
119 |
atgattttctcatgcacgcctagctagttattatacagtacttgatttcctttctgtcaattccttaacatacatcagaagattgctcacaatttcatta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23902 |
atgattttctcatgcacgcctagctagttattatacagtacttgatttcctttctgtcaattccttaacatacatcagaagattgctcacaatttcatta |
23803 |
T |
|
| Q |
219 |
tattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactcacaccatatggatctgatccggatgtccttcatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23802 |
tattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactcacaccatatggatctgatccggatgtccttcatt |
23703 |
T |
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| Q |
319 |
tgcagactagaggatctactaccaagtggttgccattatcttctaacgcaaaggaac |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23702 |
tgcagactagaggatctactaccaagtggttgccattatcttctaacgcaaaggaac |
23646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 10438148 - 10438511
Alignment:
| Q |
19 |
cacagaagcaggtgagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaatttatgcaa |
118 |
Q |
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|||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
10438148 |
cacagaagcaggtgagtctgatcatcgaattgcaaagaataatcatatttctcaatgacaacaatttttcagcatttctatggttgcagaatttatgcaa |
10438247 |
T |
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| Q |
119 |
atgattttctcatgcacgcctagctagttattatacagtacttgatttcctttctgtcaattccttaacatac------atca---------gaagattg |
203 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |||||||| |
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| T |
10438248 |
atgattttctcatgcacgcctagctagttattatacaatacttgatttcctttctgtcaattccttatcatacatgtttatcatggacattggaagattg |
10438347 |
T |
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| Q |
204 |
ctcacaatttcattatattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactcacaccatatggatctgatc |
303 |
Q |
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| T |
10438348 |
ctcacaatttcattatattgtgttacca--tgacagtgtcaggagttggcagagggagaagcatatgcaattgcaggactcacgccatatggatctgatt |
10438445 |
T |
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| Q |
304 |
cggatgtccttcatttgcagactagaggatctactaccaagtggttgccattatcttctaacgcaa |
369 |
Q |
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|||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10438446 |
cggacgtccttcgtttccagactagaggatctactaccaagtggttgccattatcttctaacgcaa |
10438511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 108; Significance: 4e-54; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 224 - 375
Target Start/End: Original strand, 37575288 - 37575439
Alignment:
| Q |
224 |
tgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactcacaccatatggatctgatccggatgtccttcatttgcag |
323 |
Q |
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||||||||| ||| || ||||||||||| ||||||||||||||||||||||||||| ||||| ||||| ||| |||||| ||||||||||||| |||||| |
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| T |
37575288 |
tgttacaatttgatagcgtcaggagctgtcagagggagaagcatatgcaattgcagaactcataccatctggctctgattcggatgtccttcacttgcag |
37575387 |
T |
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| Q |
324 |
actagaggatctactaccaagtggttgccattatcttctaacgcaaaggaac |
375 |
Q |
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| T |
37575388 |
actagaggatctactaccaagtggttgccattatcttctaatgcaaaggaac |
37575439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 37575028 - 37575177
Alignment:
| Q |
19 |
cacagaagcaggtgagtctgatcatcaaaatgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgcagaa-tttatgca |
117 |
Q |
| |
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||||||||||||||||||||||| | || |||||| |||| |||||||| || || |||| || |||||||||||| ||||||||||||| |||| ||| |
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| T |
37575028 |
cacagaagcaggtgagtctgatctttcaattgcaaacaatagtcatattttcccatatcaataaattttcagcatttttatggttgcagaattttacgca |
37575127 |
T |
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| Q |
118 |
aatgattttctcatgcacgcctagctagttattatacagtacttgatttcctt |
170 |
Q |
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| T |
37575128 |
aatgattttctcatgcatgcctagctagttagtatac---acttgatttcctt |
37575177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Original strand, 37589012 - 37589079
Alignment:
| Q |
216 |
ttatattctgttacaatgtgacagtgtcaggagctggcagagggagaagcatatgcaattgcaggactc |
284 |
Q |
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||||||| ||||||||||||| || |||| |||||||||| |||||||||||||||||||||| ||||| |
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| T |
37589012 |
ttatattgtgttacaatgtgatagcgtcaagagctggcag-gggagaagcatatgcaattgcacgactc |
37589079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 37588846 - 37588902
Alignment:
| Q |
49 |
tgcaaagaataatcatatttcccaatgtcaacaatttttcagcatttctatggttgca |
106 |
Q |
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| T |
37588846 |
tgcaaagaataatcatattttcccgtg-caataatttttcagcatttttatggttgca |
37588902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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