View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_24 (Length: 348)
Name: NF11902_high_24
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_24 |
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| [»] scaffold0027 (2 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 49600 - 49939
Alignment:
| Q |
1 |
tcttggtataatgttgacagcattt-------acgatgaaagagattattttatgttgatcgggacaattacctttgacaaaagaggaataagataaaga |
93 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49600 |
tcttggtataatgttgacagcatttacgatttacgatgaaagagattattttatgttgatcgagacaattacctttgacaaaagaggaataagataaaga |
49699 |
T |
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| Q |
94 |
tcgggacaaaagaggaataagatgaagtgtgtaaactatgttgttatttctatgtttgatatatttcggcgtgtgttttttgtttagtagacagccatga |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||| |
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| T |
49700 |
tcgggacaaaagaggaataagatgaagtgtgtaaactatgttgttatttctatgtttgatatatttcggtgtgcgttttttgtttagtagacagctatga |
49799 |
T |
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| Q |
194 |
taagttggtgaagttaatgattatcacgttggaattaaaagaacaacaatagaagaatgatggatcttgagccatttgatatatgaattttgttagacaa |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
49800 |
taagttggtgaagttaatgattatcacgttggaattaaaagaacaacaatagaagaatgatggatctggagccatttgatatatgaattttgttagacaa |
49899 |
T |
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| Q |
294 |
gttaacgatattatggtatttttatttatttatttgttcat |
334 |
Q |
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| T |
49900 |
gttaatgatattat-gtatttttatttatttatttgttcat |
49939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 49563 - 49516
Alignment:
| Q |
1 |
tcttggtataatgttgacagcatttacgatgaaagagattattttatg |
48 |
Q |
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| T |
49563 |
tcttggtataatgttgacagcatttacgatgaaatggattattttatg |
49516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25994686 - 25994733
Alignment:
| Q |
1 |
tcttggtataatgttgacagcatttacgatgaaagagattattttatg |
48 |
Q |
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| T |
25994686 |
tcttggtataatgttgatagcatttacgatgaaggagattattttatg |
25994733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 26092912 - 26092865
Alignment:
| Q |
1 |
tcttggtataatgttgacagcatttacgatgaaagagattattttatg |
48 |
Q |
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||||||||||||||||||| |||||||||| |||| |||||||||||| |
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| T |
26092912 |
tcttggtataatgttgacaacatttacgataaaagggattattttatg |
26092865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 43289632 - 43289585
Alignment:
| Q |
1 |
tcttggtataatgttgacagcatttacgatgaaagagattattttatg |
48 |
Q |
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|||||||||||| || ||||||||||||||||||| |||||||||||| |
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| T |
43289632 |
tcttggtataatcttaacagcatttacgatgaaagggattattttatg |
43289585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 22501414 - 22501360
Alignment:
| Q |
174 |
tgtttagtagacagccatgataagttggtgaagttaatgattatcacgttggaat |
228 |
Q |
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|||||||||||||| ||||| |||||||||||||||||||||| | |||||||| |
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| T |
22501414 |
tgtttagtagacagttatgatgagttggtgaagttaatgattataaggttggaat |
22501360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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