View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_27 (Length: 323)
Name: NF11902_high_27
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 52410349 - 52410043
Alignment:
| Q |
1 |
ataggacacaagattgagagacgaaatatttcactgaaaagatctctgaggagacagaaaaagggatatcgaaatgtaaaaagctcattgaatgttcaca |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52410349 |
ataggacacaagattgagagatgaaatatttcactgaaaagatctctgaggagacagaaaaagggatatcgaaatgtaaaaagctcattgaatgttcaca |
52410250 |
T |
|
| Q |
101 |
agtgaatcagacacgcatgctcgtctttatactgtgagttcaactaaatacaatttggttgattgttttcctcgagctgttaggcagtctaacactctaa |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52410249 |
agtgaatcagacacgcatgctcgtctttatactgtgagttcaactaaatacaatttggttgattgttttcctcgagctgttaggcagtctaacactctaa |
52410150 |
T |
|
| Q |
201 |
ctataacctacaacctgaagcccaactccaatatgctnnnnnnntgcctagcctaggcattaataagtctaaaaagtgtgctgaatgttgtagctcttat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52410149 |
ctataacctacaacctgaagcccaactccaatatgctaaaaaaatgcctagcctaggcattaataagtctaaaaagtgtgctgaatgttgtagctcttat |
52410050 |
T |
|
| Q |
301 |
attaatt |
307 |
Q |
| |
|
||||||| |
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|
| T |
52410049 |
attaatt |
52410043 |
T |
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