View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_29 (Length: 283)
Name: NF11902_high_29
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 867562 - 867437
Alignment:
| Q |
6 |
agaagcagagaacctatatgtgaaattggtcccacatggaggccgcatcaaaaaattaacagctgggttatttgtcaatgcagagtaggattagtatcac |
105 |
Q |
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| T |
867562 |
agaagcagaaaacctagatgtgaaattgatcccacatctaggccgcatcaaaaaattaacagctggattatttgccaatggagagtagagttagtatcac |
867463 |
T |
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| Q |
106 |
gagatttagattctatgacaaaatag |
131 |
Q |
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| T |
867462 |
caaatttagattctatgacaaaatag |
867437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 131
Target Start/End: Complemental strand, 1228839 - 1228714
Alignment:
| Q |
6 |
agaagcagagaacctatatgtgaaattggtcccacatggaggccgcatcaaaaaattaacagctgggttatttgtcaatgcagagtaggattagtatcac |
105 |
Q |
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| T |
1228839 |
agaagcagaaaacctagatgtgaaattgatcccacatctaggccgcatcaaaaaattaacagctggattatttgccaatggagagtagagttagtatcac |
1228740 |
T |
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| Q |
106 |
gagatttagattctatgacaaaatag |
131 |
Q |
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| T |
1228739 |
caaatttagattctatgacaaaatag |
1228714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 867287 - 867248
Alignment:
| Q |
244 |
aacaactaaacaatgaaaatccaacaaaaaatcaaaacga |
283 |
Q |
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| T |
867287 |
aacaactaaacaatgaaaatccaacaaaaaatcaaaacga |
867248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 244 - 283
Target Start/End: Complemental strand, 1228564 - 1228525
Alignment:
| Q |
244 |
aacaactaaacaatgaaaatccaacaaaaaatcaaaacga |
283 |
Q |
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| T |
1228564 |
aacaactaaacaatgaaaatccaacaaaaaatcaaaacga |
1228525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 867385 - 867348
Alignment:
| Q |
151 |
tgcgcaagaagcgaataagatgggataagaaaatctca |
188 |
Q |
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| T |
867385 |
tgcgcaagaagcgaataagattggataagaaaatctca |
867348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 1228662 - 1228625
Alignment:
| Q |
151 |
tgcgcaagaagcgaataagatgggataagaaaatctca |
188 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
1228662 |
tgcgcaagaagcgaataagattggataagaaaatctca |
1228625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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