View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_30 (Length: 280)
Name: NF11902_high_30
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 5890024 - 5890213
Alignment:
| Q |
13 |
agaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagtaactacttcaa |
112 |
Q |
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||||||||||||||||||| |||||| | || |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| | |
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| T |
5890024 |
agaagaacaacaaagcaaagccattcaatctattacttgagatacaagttatctaatttaatcatgtaattagcttataattagagagtaactactttag |
5890123 |
T |
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| Q |
113 |
ttagtttagttgattactataaatacctattgtactgtcatttccaattatgttgaacgaagctattttcactttctcatttccataata |
202 |
Q |
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| T |
5890124 |
ttagtttagctgatctctataaatacctattgtactctcatttacaatcatgttgaatgaagctattttcactttctcatttgcataata |
5890213 |
T |
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Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 46677355 - 46677545
Alignment:
| Q |
13 |
agaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagtaactacttcaa |
112 |
Q |
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| T |
46677355 |
agaagaacaacaaagccaagatattccagctgttacttgagatactagttatatagtttaatcttgtaattagcttataattagagagtaactactctgg |
46677454 |
T |
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| Q |
113 |
ttagtttagttgattactataaatacctattgtactgtcatttccaattatgttgaacgaagcta-ttttcactttctcatttccataata |
202 |
Q |
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| T |
46677455 |
ttagtttagttcatctctataaatacccattgtactctcattttctgttgtgttgaatgaagctatttttcactttctcatttccataata |
46677545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 16989114 - 16989304
Alignment:
| Q |
13 |
agaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagtaactacttcaa |
112 |
Q |
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|||||||||||||||| || ||||||||||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||||| |||| |
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| T |
16989114 |
agaagaacaacaaagccaagatattccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagtaattactctgg |
16989213 |
T |
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| Q |
113 |
ttagtttagttgattactataaatacctattgtactgtcatttccaattatgttgaacg-aagctattttcactttctcatttccataataa |
203 |
Q |
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| T |
16989214 |
tcag-ttagttcatctctataaatacctattgtactctccttttctgctatgttgaatgaaagctattttcactttctcatttcaataataa |
16989304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 16984415 - 16984604
Alignment:
| Q |
13 |
agaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagtaactacttcaa |
112 |
Q |
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||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||||| |||| |
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| T |
16984415 |
agaagaacaacaaagcaaagatattccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagtaattactctgg |
16984514 |
T |
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| Q |
113 |
ttagtttagttgattactataaatacctattgtactgtcatttccaattatgttgaacg-aagctattttcactttctcatttccataata |
202 |
Q |
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| T |
16984515 |
tcag-ttaaatcatctctataaatacctattgtactcttcttttctgctatgttgaatgaaagctattttcactttctcatttcaataata |
16984604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 101
Target Start/End: Complemental strand, 21806840 - 21806752
Alignment:
| Q |
13 |
agaagaacaacaaagcaaaaccattccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagt |
101 |
Q |
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| T |
21806840 |
agaagaacaacaaagccaagatattccaactgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagt |
21806752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 101
Target Start/End: Complemental strand, 21811497 - 21811432
Alignment:
| Q |
36 |
ttccagctgttacttgagatacaagttatatagcttaatcatgtaattagcttataattagagagt |
101 |
Q |
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|||||||||||||||||||| | |||||||||| |||||| |||||||||| |||||||||||||| |
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| T |
21811497 |
ttccagctgttacttgagattctagttatatagtttaatcttgtaattagcatataattagagagt |
21811432 |
T |
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