View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_34 (Length: 257)
Name: NF11902_high_34
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 35496091 - 35495873
Alignment:
| Q |
1 |
tgtgtgtgcttaaattaattttttaaactcaaaatcagatgtaacaaacaaaagcatatttatttaatgagaaacctgcatgcagcttgatcacattctc |
100 |
Q |
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| T |
35496091 |
tgtgtgtgcttaaattaattttttaaattcaaaatcagatgtaacaaacaaaagaatatttatttaatgagaaacttgcatgcagcttgatcacatgctc |
35495992 |
T |
|
| Q |
101 |
ttaattcttataataaagagctcttataggtgaacc--------tggctaacaccaattgacctccacaccaaaaagcaacacgtggcctccttttattg |
192 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35495991 |
ttaattcttatagtaaagagctcttataggtgaaccatcataggtggctaacaccaattgacctccacaccaaaaagcaacacgtggcctctttttattg |
35495892 |
T |
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| Q |
193 |
tgtgatttcataaaataag |
211 |
Q |
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| T |
35495891 |
tgtgatttcataaaataag |
35495873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 137 - 211
Target Start/End: Complemental strand, 23112772 - 23112698
Alignment:
| Q |
137 |
tggctaacaccaattgacctccacaccaaaaagcaacacgtggcctccttttattgtgtgatttcataaaataag |
211 |
Q |
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|||| |||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||| |
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| T |
23112772 |
tggcaaacacccgttgacctccacaccaaaaagcaacatgtgacctccttttattgtgtgatttcttaaaataag |
23112698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 182
Target Start/End: Complemental strand, 11778233 - 11778201
Alignment:
| Q |
150 |
ttgacctccacaccaaaaagcaacacgtggcct |
182 |
Q |
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| T |
11778233 |
ttgacctccacaccaaaatgcaacacgtggcct |
11778201 |
T |
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