View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_high_44 (Length: 232)
Name: NF11902_high_44
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_high_44 |
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Alignment Details
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 64 - 214
Target Start/End: Original strand, 12139963 - 12140113
Alignment:
| Q |
64 |
gagatactagcctttgcatacaccaatgatgaattacttgaatcagatgcttggtacaaaagatcctactctagagaattgtacatctacattgacttcc |
163 |
Q |
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| T |
12139963 |
gagatactagcctttgcatacaccaattatgaattacttgaatcagatgcttggtacagaagatcctactccagagaattgtacatcaacattgacttcc |
12140062 |
T |
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| Q |
164 |
acagttgaccttagtcttgtgtagaacttcttctttatctatgacacatag |
214 |
Q |
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| T |
12140063 |
acagttgaccttagtcttgtgtagaacttcttctttatctatgacagatag |
12140113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 12139792 - 12139839
Alignment:
| Q |
16 |
gagatgaagtagatgatcgttgatgaagaaatccttttcttagaatac |
63 |
Q |
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| T |
12139792 |
gagatgaagtagatgatcgttgatgaagaaatccttgtcttagaatac |
12139839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 181
Target Start/End: Original strand, 18953614 - 18953731
Alignment:
| Q |
64 |
gagatactagcctttgcatacaccaatgatgaattacttgaatcagatgcttggtacaaaagatcctactctagagaattgtacatctacattgacttcc |
163 |
Q |
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| T |
18953614 |
gagatactagtcgttgcatatttcaatgacgaattacttaagtcagatgcttggtacagataatcctaccacagcggattgtacatcatcattgacttcc |
18953713 |
T |
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| Q |
164 |
acagttgaccttagtctt |
181 |
Q |
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| T |
18953714 |
acaattgaccttaatctt |
18953731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 182
Target Start/End: Original strand, 9022902 - 9023006
Alignment:
| Q |
77 |
ttgcatacaccaatgatgaattacttgaatcagatgcttggtacaaaagatcctactctagagaattgtacatctacattgacttccacagttgacctta |
176 |
Q |
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| T |
9022902 |
ttgcatacatcaatgatga-ttacttgagtcaattgcttggtacaaaggatcttactacagaggattatacaacaacattgactaccacaattggcctta |
9023000 |
T |
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| Q |
177 |
gtcttg |
182 |
Q |
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||||| |
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| T |
9023001 |
atcttg |
9023006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 176
Target Start/End: Original strand, 9828751 - 9828835
Alignment:
| Q |
92 |
atgaattacttgaatcagatgcttggtacaaaagatcctactctagagaattgtacatctacattgacttccacagttgacctta |
176 |
Q |
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| T |
9828751 |
atgatttacttgagtcagatgcttggtacagaggatctcactccatatgattgtacatcaatattgacttccatagttgacctta |
9828835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 18953445 - 18953490
Alignment:
| Q |
16 |
gagatgaagtagatgatcgttgatgaagaaatccttttcttagaat |
61 |
Q |
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| T |
18953445 |
gagatgacgtagatgatcgttgatgaagaaacccttgtctttgaat |
18953490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 182
Target Start/End: Complemental strand, 26656260 - 26656188
Alignment:
| Q |
110 |
atgcttggtacaaaagatcctactctagagaattgtacatctacattgacttccacagttgaccttagtcttg |
182 |
Q |
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| T |
26656260 |
atgcttggtacagaggatcctactacaaaggattgtagaacaacattgacttccacaattgaccttattcttg |
26656188 |
T |
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