View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_high_9 (Length: 546)

Name: NF11902_high_9
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_high_9
NF11902_high_9
[»] chr2 (15 HSPs)
chr2 (12-529)||(8379862-8380384)
chr2 (206-395)||(30394060-30394249)
chr2 (159-395)||(30383931-30384167)
chr2 (156-433)||(23767614-23767891)
chr2 (156-433)||(23784188-23784465)
chr2 (156-433)||(23796783-23797060)
chr2 (223-413)||(30424085-30424275)
chr2 (206-386)||(30482837-30483017)
chr2 (206-413)||(30468078-30468285)
chr2 (206-386)||(30436363-30436543)
chr2 (206-413)||(30475207-30475414)
chr2 (223-377)||(30430154-30430308)
chr2 (59-115)||(23767922-23767978)
chr2 (59-115)||(23797099-23797156)
chr2 (62-115)||(23784096-23784149)
[»] chr5 (1 HSPs)
chr5 (206-402)||(41628323-41628519)
[»] chr8 (4 HSPs)
chr8 (244-385)||(15860290-15860431)
chr8 (244-350)||(15852929-15853035)
chr8 (261-385)||(15846118-15846242)
chr8 (245-385)||(15866678-15866818)


Alignment Details
Target: chr2 (Bit Score: 433; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 12 - 529
Target Start/End: Original strand, 8379862 - 8380384
Alignment:
Q  12 gagaagaatctatatctttttcaatttcatgcatcctcctttgagttgctgtaggtataaacctacaagtaaaaatagtagtcatgtaaaactagcctct 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379862 gagaagaatctatatctttttcaatttcatgcatcctcctttgagtagctgtaggtataaacctacaagtaaaaatagtagtcatgtaaaactagcctct 8379961  T
Q  112 tagtaaaatttttgaagtaatgatagaaattatgatatgaacattagtcttacctccataaagggattaaagatttcactagatttttcataacaagttc 211  Q
    |  ||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8379962 ttttaaaaatcttgaagtaatgatagaaattatgatatgaacattagtcttacctccataaagggattaaagatttcactagatttttcataacaagttc 8380061  T
Q  212 accttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaa 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8380062 accttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaa 8380161  T
Q  312 ggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatct 411  Q
    |||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8380162 ggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaacttgtgaggaaacttggtgccatgatct 8380261  T
Q  412 gtggtggaataagaaagaaacaacc-aagaattaaaactttgtgtcaaacacagtacttgtag---ataaacaaaattatgtatcttgcagggacagatg 507  Q
    |||||| |||||||||||||||||| ||| ||| ||| ||||||||||||  |||||||||||   ||||||||||||||||||||||||||||||||||    
T  8380262 gtggtgtaataagaaagaaacaaccaaaggattcaaattttgtgtcaaactaagtacttgtagcttataaacaaaattatgtatcttgcagggacagatg 8380361  T
Q  508 cagaaatatcgaat-gtgaaggc 529  Q
    |||||||||||||| ||||||||    
T  8380362 cagaaatatcgaatagtgaaggc 8380384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 206 - 395
Target Start/End: Complemental strand, 30394249 - 30394060
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||||||||||||||| | ||||||||||||||||||||| |||||||||||||| ||  ||||||||||| ||||||||| |||||||||     
T  30394249 aagttcagcttgctctctttgaagttgaaatattctttttccttcttcataactacttccaaacgcagttcgagaaatagcatcacttgccaaattctgc 30394150  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaa 395  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||||||||||||| |||||||||||| ||||    
T  30394149 agggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaacttgtgaagaaa 30394060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 159 - 395
Target Start/End: Complemental strand, 30384167 - 30383931
Alignment:
Q  159 tcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaac 258  Q
    |||||| ||||||||||||| | |||||||  || |  |||||  | ||||||| |||||||||||||||| | ||||||||||||||||||||| || |    
T  30384167 tcttacatccataaagggatgatagatttcgttacaactttcactataagttcagcttgctctctttgaagttgaaatattctttttccttcttcatagc 30384068  T
Q  259 tacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctc 358  Q
    |||||||||||||| ||||||||||| ||||||||| |||||| || |||||||||||||| |||||||||| ||||||||||||||||||  ||  |||    
T  30384067 tacttccaaatgcggttcgagaaatagcatcacttgccaaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctc 30383968  T
Q  359 ccatttgctaatcatatcagtgcaacttgtgaggaaa 395  Q
    ||||||| |||||| |||| |||||||||||| ||||    
T  30383967 ccatttgttaatcaaatcattgcaacttgtgaagaaa 30383931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 156 - 433
Target Start/End: Complemental strand, 23767891 - 23767614
Alignment:
Q  156 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 255  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23767891 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23767792  T
Q  256 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 355  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||||||||||||||   ||||||| ||||||||| ||| |    
T  23767791 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggatccatttgaagacaacgtttc 23767692  T
Q  356 ctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatctgtggtggaataagaaagaaaca 433  Q
     ||||| |||||||||| |||  |||| ||| | | |||  |||||| ||| |||| ||||| |||||  ||||||||    
T  23767691 ttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgtcataatctatggtgtaataaataagaaaca 23767614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 156 - 433
Target Start/End: Original strand, 23784188 - 23784465
Alignment:
Q  156 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 255  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23784188 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23784287  T
Q  256 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 355  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||| ||| ||||||| |||||||| |||||||||  ||      
T  23784288 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatacgtccatttcacatgatccatttgaagacaacatttt 23784387  T
Q  356 ctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatctgtggtggaataagaaagaaaca 433  Q
     ||||| |||||||||| |||| |||| ||| | | |||  |||||| ||| ||||  |||| ||||| |||||||||    
T  23784388 ttcccaattgctaatcaaatcattgcagcttttcaagaatgttggtgtcataatctacggtgtaataaaaaagaaaca 23784465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 156 - 433
Target Start/End: Complemental strand, 23797060 - 23796783
Alignment:
Q  156 tagtcttacctccataaagggattaaagatttcactagatttttcataacaagttcaccttgctctctttgaagatcaaatattctttttccttcttcgt 255  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| ||||||| | ||||| | || |||||||||| |    
T  23797060 tagtcttacctccataaagggattaaagatttcattagatttttcattataagttcaccttgctctatttgaagttgaaatacttttcttccttcttcat 23796961  T
Q  256 aactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgc 355  Q
    |||||||||||||||     ||||  |||||||||||||||||  |||| ||||||||||||||||||||||||   | ||||  ||||||||| ||| |    
T  23796960 aactacttccaaatgacgaacgagcgataacatcacttgtcaagctctgaagggaaggccatatgtctatttcagaggctccacttgaagacaacgtttc 23796861  T
Q  356 ctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatctgtggtggaataagaaagaaaca 433  Q
     ||||| |||||||||| |||  |||| ||| | | |||  |||||| ||| |||| ||||| |||||  ||||||||    
T  23796860 ttcccaattgctaatcaaatcgttgcagcttttcaagaatgttggtgtcataatctatggtgtaataaataagaaaca 23796783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 223 - 413
Target Start/End: Complemental strand, 30424275 - 30424085
Alignment:
Q  223 tttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtc 322  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||||||   |||||||||||||||||| | |||||| || ||| ||||||||| |||    
T  30424275 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatcactcgccaaattttgaaggaaaggccatacgtc 30424176  T
Q  323 tatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgccatgatctgt 413  Q
     ||||||| |||||||||||||| |||  ||  ||||||||||||||||| ||||  ||||||| ||||| |  |||||  ||||||||||    
T  30424175 catttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcatcgcaacttttgaggtatattggtaacatgatctgt 30424085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 206 - 386
Target Start/End: Complemental strand, 30483017 - 30482837
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||||||  ||||||| | ||||||| || |||||||||| |||||||||||||||||  |||||| |||||||||||| | |||||| ||     
T  30483017 aagttcagcttgctccttttgaagttgaaatatttttattccttcttcataactacttccaaatgctgttcgagcaataacatcactagccaaattttga 30482918  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaactt 386  Q
    | |||||||||||  || ||||||| |||||||||| | || ||  || ||||||||||||||||||||||| ||||||||    
T  30482917 atggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaactt 30482837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 206 - 413
Target Start/End: Complemental strand, 30468285 - 30468078
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||| ||  ||||||| | ||||||||||||||| ||||| |||||||||||||| ||   |||||||||||||||||| |  ||||| ||     
T  30468285 aagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataacatcactggcaaaattttga 30468186  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgcca 405  Q
    ||| ||||||||| ||| ||||||| |||||||||||| |||||  ||  ||||||||||||||||| ||||  ||||||| || ||||  |||||  ||    
T  30468185 aggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcagatcatcgcaacttttgtggaatattggtaaca 30468086  T
Q  406 tgatctgt 413  Q
    ||||||||    
T  30468085 tgatctgt 30468078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 206 - 386
Target Start/End: Complemental strand, 30436543 - 30436363
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||| ||  ||||||| | ||||||||||||||| ||||| |||||||||||||| ||   ||||||||||| |||||| | |||||| ||     
T  30436543 aagttcagcttgttcggtttgaagttgaaatattctttttccctcttcataactacttccaaacgctgctcgagaaataagatcactggccaaattttga 30436444  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaactt 386  Q
    ||| ||||||||| ||| ||||||| |||||||||||| |||||  ||  ||||||||||||||||| ||||  |||||||    
T  30436443 aggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcaaatcatcgcaactt 30436363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 206 - 413
Target Start/End: Complemental strand, 30475414 - 30475207
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||||||  ||||||| | ||||||||||||||| ||||| |||||||||||||||||  ||| ||||||||||||||| | |||||| ||     
T  30475414 aagttcagcttgctcgatttgaagttgaaatattctttttccctcttcataactacttccaaatgctgttctagaaataacatcactcgccaaattttga 30475315  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtgcca 405  Q
    ||| ||||||| |  || | ||||| |||||||||||| |||||  ||  |||||||||| |||||| ||||   |||||| ||| |||| |||||  ||    
T  30475314 aggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttggtaatcaaatcatcacaacttttgaagaaaattggtaaca 30475215  T
Q  406 tgatctgt 413  Q
    ||||||||    
T  30475214 tgatctgt 30475207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 223 - 377
Target Start/End: Complemental strand, 30430308 - 30430154
Alignment:
Q  223 tttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtc 322  Q
    ||||||| | ||||||||||||||| ||||| |||||||||||||||||   ||||||||||||||| ||||  ||||| || ||| |||||||||  ||    
T  30430308 tttgaagttgaaatattctttttccctcttcataactacttccaaatgcagctcgagaaataacatctcttgctaaattttgaaggaaaggccatacttc 30430209  T
Q  323 tatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatca 377  Q
     ||||||| |||||||||||||| |||  ||  ||||||||||||||||| ||||    
T  30430208 catttcacatgatccatctgaagccaacattttctcccatttgctaatcagatca 30430154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 23767978 - 23767922
Alignment:
Q  59 gctgtaggtataaacctacaagtaaaaatagtagtcatgtaaaactagcctcttagt 115  Q
    |||||||||| |||||| |||||||||| | |||||||||||||||||| |||||||    
T  23767978 gctgtaggtaaaaacctgcaagtaaaaagaatagtcatgtaaaactagcatcttagt 23767922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 23797156 - 23797099
Alignment:
Q  59 gctgtaggtataaacctacaagta-aaaatagtagtcatgtaaaactagcctcttagt 115  Q
    |||||||||| ||||||||||||| |||| | |||||||||||||||||| |||||||    
T  23797156 gctgtaggtaaaaacctacaagtaaaaaagaatagtcatgtaaaactagcatcttagt 23797099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 23784096 - 23784149
Alignment:
Q  62 gtaggtataaacctacaagtaaaaatagtagtcatgtaaaactagcctcttagt 115  Q
    ||||||| |||||| |||||||||| | |||||||||||||||| | |||||||    
T  23784096 gtaggtaaaaacctgcaagtaaaaagaatagtcatgtaaaactaacatcttagt 23784149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 206 - 402
Target Start/End: Original strand, 41628323 - 41628519
Alignment:
Q  206 aagttcaccttgctctctttgaagatcaaatattctttttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgt 305  Q
    ||||||| |||||||  ||||||| | |||||||||| |||||||||| ||||||||||| ||||   ||||||||||||||||||| | |||||||||     
T  41628323 aagttcagcttgctcaatttgaagttgaaatattcttcttccttcttcataactacttccgaatgttgttcgagaaataacatcactcgccaaattctga 41628422  T
Q  306 agggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctcccatttgctaatcatatcagtgcaacttgtgaggaaacttggtg 402  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||  || |||||||||| ||||| | |||  |||||||||||| |||| ||||||    
T  41628423 agggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattttctaattaaatcgttgcaacttgtgaagaaagttggtg 41628519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 385
Target Start/End: Original strand, 15860290 - 15860431
Alignment:
Q  244 ttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctga 343  Q
    |||||||| |||| || |||||||||||  | |||||||| |||||||  || |||||||| ||||||||||| |  || || |||| || |||||||||    
T  15860290 ttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacaggtaaaattctgaagggaaggccaaacatcaatctcacatgttccatctga 15860389  T
Q  344 agacaatgttgcctcccatttgctaatcatatcagtgcaact 385  Q
     ||||||  | ||| ||||||||| ||||| ||| |||||||    
T  15860390 tgacaataatcccttccatttgcttatcatttcattgcaact 15860431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 244 - 350
Target Start/End: Original strand, 15852929 - 15853035
Alignment:
Q  244 ttccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctga 343  Q
    |||||||| |||| || |||||||||||  | |||||||| |||||||  ||||||||||| ||| ||||||| |  || || |||| || |||||||||    
T  15852929 ttccttctgcgtagctgcttccaaatgctgtccgagaaattacatcacacgtcaaattctgaaggaaaggccaaacatcaatctcacatgttccatctga 15853028  T
Q  344 agacaat 350  Q
     ||||||    
T  15853029 tgacaat 15853035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 261 - 385
Target Start/End: Original strand, 15846118 - 15846242
Alignment:
Q  261 cttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaagacaatgttgcctccc 360  Q
    |||||||||||  ||| |||||| |||||||  ||||||||||| ||| ||||||| |  || |  |||| || ||||||||| ||||||  | ||| ||    
T  15846118 cttccaaatgctgttctagaaattacatcacaggtcaaattctgaaggaaaggccaaacatcaagctcacatgttccatctgatgacaataatcccttcc 15846217  T
Q  361 atttgctaatcatatcagtgcaact 385  Q
    ||||||| ||||| ||| |||||||    
T  15846218 atttgcttatcatttcattgcaact 15846242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 245 - 385
Target Start/End: Original strand, 15866678 - 15866818
Alignment:
Q  245 tccttcttcgtaactacttccaaatgcgtttcgagaaataacatcacttgtcaaattctgtagggaaggccatatgtctatttcacctgatccatctgaa 344  Q
    ||||||| |||| || |||||||||||  | |||||||| |||||||  || |||||||| ||| ||||||| |  || |  |||| || |||||||||     
T  15866678 tccttctgcgtagctgcttccaaatgccgtccgagaaattacatcacaggtaaaattctgaaggaaaggccaaacatcaacctcacatgttccatctgat 15866777  T
Q  345 gacaatgttgcctcccatttgctaatcatatcagtgcaact 385  Q
    ||||||  | ||| |||||| |||||||| ||| |||||||    
T  15866778 gacaatagttccttccatttactaatcatttcattgcaact 15866818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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