View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_10 (Length: 515)
Name: NF11902_low_10
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 20 - 510
Target Start/End: Original strand, 30408705 - 30409195
Alignment:
| Q |
20 |
catctttatcaccatcatgattaccaagtgctgaagaatgctccggagcgttgtccgattcaaacataccttgagatctagctctcttcataggatccga |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30408705 |
catctttatcaccatcatgattaccaagtgctgaagaatgctccggagcgttgtccgattcaaacataccttgagatctagctctcttcataggatctga |
30408804 |
T |
|
| Q |
120 |
aagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccagattgtgttttgcatctttcccccatgactgaatgtttccc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30408805 |
aagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccggattgtgttttgcatctttcccccatgactgaatgtttccc |
30408904 |
T |
|
| Q |
220 |
cataccgaatcagcatcaactctatcacatgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacatgaatgtg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30408905 |
cataccgaatcagcatcaactctatcacatgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacttgaatgtg |
30409004 |
T |
|
| Q |
320 |
gttttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30409005 |
gttttgcatggttatgattacccttgtaaataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtaca |
30409104 |
T |
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| Q |
420 |
tttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctgaggtctctgctcct |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
30409105 |
tttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctgaggtctttgctcct |
30409195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 249 - 510
Target Start/End: Original strand, 30395273 - 30395534
Alignment:
| Q |
249 |
tgtttcattggcttcagcattttctgatatctcatcactagaaggtactgatcctcggcgacatgaatgtggttttgcatggttatgattacccttgtaa |
348 |
Q |
| |
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||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||| ||||| |
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| T |
30395273 |
tgtttcattggcttcagcattttctgacatttcatcactagaaggtactgatcctcgacgacttgaatttggttttgcatggttatgattaccactgtaa |
30395372 |
T |
|
| Q |
349 |
ataatttctgttatgtggccatcgtgtgatctttccacctttttcttgacctgacaattagaatgagtacatttgtagtagcttctcggatattcactac |
448 |
Q |
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||||||||| |||||| |||||| ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |
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| T |
30395373 |
ataatttctcttatgttgccatcatgtgatctttccacctttttcctgacctgacaattagactgattacatttgtagtagcttctcggatattcactgc |
30395472 |
T |
|
| Q |
449 |
cttttacttgtttttggccatattttctccaattataaccatcctctgaggtctctgctcct |
510 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||| |
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| T |
30395473 |
cttttacttgtttttggccatattttctccaattataaccatcctgtaaggtctttgctcct |
30395534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 30395071 - 30395271
Alignment:
| Q |
20 |
catctttatcaccatcatgattaccaagtgctgaagaatgctccggagcgttgtccgattcaaacataccttgagatctagctctcttcataggatccga |
119 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30395071 |
catctttatcaccatcatgattatcaagtgcggaagaatgctcctgagcgtcgtctgattcaaacataccttgagatctagctctcttcataggatccga |
30395170 |
T |
|
| Q |
120 |
aagctcggtcacaccagaaggcggggatgtcctttcttgaccatcaggcttccgttccagattgtgttttgcatctttcccccatgactgaatgtttccc |
219 |
Q |
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|||| |||| ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||| || | ||||||||||||||| |
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| T |
30395171 |
aagcccggtgacatcagaaggttgggatgtcctttcttgaccatcaggcttccattccggattgtgttttgcatcttttcctcgcgactgaatgtttccc |
30395270 |
T |
|
| Q |
220 |
c |
220 |
Q |
| |
|
| |
|
|
| T |
30395271 |
c |
30395271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 491
Target Start/End: Original strand, 26332563 - 26332619
Alignment:
| Q |
435 |
cggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
491 |
Q |
| |
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||||| ||| || ||||| |||||||| || ||||||||||||||||| |||||||| |
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| T |
26332563 |
cggattttcgcttcctttcacttgtttctgtccatattttctccaattgtaaccatc |
26332619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 401 - 494
Target Start/End: Complemental strand, 2056390 - 2056297
Alignment:
| Q |
401 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctc |
494 |
Q |
| |
|
||||||| ||||||||||| |||||||| |||| || || || ||||| || ||||| |||||||||||||||||||||||||| |||||||| |
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| T |
2056390 |
gacaatttgaatgagtacacttgtagtaacttcgagggtactcgctacccttaacttgcttttggccatattttctccaattatatccatcctc |
2056297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 401 - 497
Target Start/End: Original strand, 26967038 - 26967134
Alignment:
| Q |
401 |
gacaattagaatgagtacatttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatcctctga |
497 |
Q |
| |
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||||||||| | ||| ||||| || || ||||| |||| |||||| ||||| ||||||||||| ||||||||||||||||| || ||||| ||||| |
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|
| T |
26967038 |
gacaattagggtaagtgcatttataataacttcttggattttcacttcctttcacttgtttttgtccatattttctccaattgtatccatcatctga |
26967134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 491
Target Start/End: Original strand, 31615355 - 31615428
Alignment:
| Q |
418 |
catttgtagtagcttctcggatattcactaccttttacttgtttttggccatattttctccaattataaccatc |
491 |
Q |
| |
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||||||||||| |||||||||| |||||| || || ||||| ||||| |||||||||| |||||| || ||||| |
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| T |
31615355 |
catttgtagtaacttctcggattttcacttcccttaacttgcttttgtccatattttcgccaattgtatccatc |
31615428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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