View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_12 (Length: 493)
Name: NF11902_low_12
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Original strand, 10477858 - 10478311
Alignment:
| Q |
13 |
agatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaat |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10477858 |
agatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaat |
10477957 |
T |
|
| Q |
113 |
tttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaacagattgtgttgattttcnnnnnnn----gtcctttgttta |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
10477958 |
tttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaacagattgtgttgattttctttttttttttgtcctttgttta |
10478057 |
T |
|
| Q |
209 |
aaggatttatataatatgagtttattttgacatgttcttttatttctttcagctcttttcttctgcataatgttagcattgatactataatcaaacaaca |
308 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10478058 |
aaggatttatataat--gagtttattttgacatgttcttttatttctttcagctcttttcttctgcataatgttagcattgatactataatcaaacaaca |
10478155 |
T |
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| Q |
309 |
aaaatattggaaatatgaatatagggtagtttattttgtgattaaaagcaatggtacatcatattagaaagcaccaatcctttcattatacgcgtatctt |
408 |
Q |
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| T |
10478156 |
aaaatattggaaatatgaatatagggtagtttattttgtgattaaaagcaatggtacatcatattagaaagcaccaatcctttcattatacgcgtatctt |
10478255 |
T |
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| Q |
409 |
tggattcgtggtgagtttgacagaatcaaagagtgaaaccgtgattttggcaagag |
464 |
Q |
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| T |
10478256 |
tggattcgtggtgagtttgacagaatcaaagagtgaaaccgtgattttggcaagag |
10478311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 7204116 - 7204148
Alignment:
| Q |
402 |
gtatctttggattcgtggtgagtttgacagaat |
434 |
Q |
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| T |
7204116 |
gtatgtttggattcgtggtgagtttgacagaat |
7204148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 2855939 - 2856194
Alignment:
| Q |
13 |
agatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaat |
112 |
Q |
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|||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||| |||||| |
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| T |
2855939 |
agatggttttattgatgcaatggagttgaaaagagttatgtgtattttgggatttaaggaaggttcggaagttgagaattgtcagaagatgattaagaat |
2856038 |
T |
|
| Q |
113 |
tttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaacagattgtgttgattttcnnnnnnngtcctttgtttaaagg |
212 |
Q |
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| T |
2856039 |
tttgatgcaaatcaagatggaagaattgatttcattgaatttgtaaaaattatggaaaatagattgtgttgatt---agtttttttcctttgtttaaagg |
2856135 |
T |
|
| Q |
213 |
atttatataatatgagtttattttgacatgttcttttatttctttcagctcttttcttct |
272 |
Q |
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||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2856136 |
atttatataatgtgag-ttattttgacattttcttttatttctttcagctcttttcttct |
2856194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 21 - 180
Target Start/End: Original strand, 2851855 - 2852003
Alignment:
| Q |
21 |
ttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaattttgatga |
120 |
Q |
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|||||||||||| ||| ||||||||||||||||||||||||||||| || ||||||||||||||| ||| || ||||||||||| ||||| |
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| T |
2851855 |
ttattgatgcaatggagttgcaaagagttatgtgtattttgggatttaaggaaggtttagaagtt-----------gaaaattatcaagaatttcgatga |
2851943 |
T |
|
| Q |
121 |
aaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaacagattgtg |
180 |
Q |
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||| || |||| ||||||||| || | |||||||||| ||||||||||||| |||||| |
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| T |
2851944 |
aaatcatgatgaaagaattgacttaatcgaatttgtaatgattatggaaaacatattgtg |
2852003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 52971242 - 52971083
Alignment:
| Q |
13 |
agatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaat |
112 |
Q |
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|||||| ||||||||||||||||| |||||||||||| | ||||||||||||||| |||| | |||| || |||| || || |||||||||| | | |
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| T |
52971242 |
agatggttttattgatgcaaaggagttgcaaagagttcttgttattttgggattgaaacaaggatcagaatttgagaactgccaaaagatgatcacaatt |
52971143 |
T |
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| Q |
113 |
tttgatgaaaaccaagatggaagaattgatttcactgaatttgtaaaaattatggaaaac |
172 |
Q |
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||||||||||| |||||||||||||||||||||| ||| |||||||| |||||| ||||| |
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| T |
52971142 |
tttgatgaaaatcaagatggaagaattgatttcattgagtttgtaaatattatgaaaaac |
52971083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Complemental strand, 52967277 - 52967223
Alignment:
| Q |
87 |
agaattgtcagaagatgatcaagaattttgatgaaaaccaagatggaagaattga |
141 |
Q |
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|||| ||||| ||||| |||||||||||||||||||| ||||||| ||||||||| |
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| T |
52967277 |
agaaatgtcaaaagattatcaagaattttgatgaaaatcaagatgaaagaattga |
52967223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 402 - 434
Target Start/End: Original strand, 56560017 - 56560049
Alignment:
| Q |
402 |
gtatctttggattcgtggtgagtttgacagaat |
434 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
56560017 |
gtatgtttggattcgtggtgagtttgacagaat |
56560049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 9e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 8216228 - 8216334
Alignment:
| Q |
13 |
agatggatttattgatgcaaaggaattgcaaagagttatgtgtattttgggattgaatgaaggtttagaagttaagaattgtcagaagatgatcaagaat |
112 |
Q |
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|||||| ||||||||| ||| ||| ||| ||| |||||||||||||||||||| || ||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
8216228 |
agatggttttattgattcaatggagttgaaaaatgttatgtgtattttgggatttaaggaaggttcagaagttgagaattgtcagaagatgattaagaat |
8216327 |
T |
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| Q |
113 |
tttgatg |
119 |
Q |
| |
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||||||| |
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| T |
8216328 |
tttgatg |
8216334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 8216342 - 8216408
Alignment:
| Q |
201 |
tttgtttaaaggatttatataatatgagtttattttgacatgttcttttatttctttcagctcttttc |
268 |
Q |
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||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||| ||||||||| |
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| T |
8216342 |
tttgtttaaaggatttatataatgtgag-ttattttaacattttcttttatttcttttggctcttttc |
8216408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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