View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_13 (Length: 472)
Name: NF11902_low_13
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 192 - 456
Target Start/End: Complemental strand, 45363087 - 45362823
Alignment:
| Q |
192 |
taaacaccattgagtttgattgaatactaaccaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacag |
291 |
Q |
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| T |
45363087 |
taaacaccattgagttttattgaatactaaccaagactgaacatggccatgccaagccctgcatccgacaatatggaaatagactttgctatgataacag |
45362988 |
T |
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| Q |
292 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
391 |
Q |
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| T |
45362987 |
gcatttcaatattccacctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattat |
45362888 |
T |
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| Q |
392 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgctccaccttcctcccctctct |
456 |
Q |
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| T |
45362887 |
caatatcagcctcgtcattatacttgctggtggcatcgtttttgccccaccttcctcccctctct |
45362823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 161
Target Start/End: Complemental strand, 45363379 - 45363237
Alignment:
| Q |
19 |
agcagctgccatgacagctggaccggtaaggaatctaatggccatagagaaagctgctatgcgattacctcatgctataatcctcggttgcaaagccatg |
118 |
Q |
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| T |
45363379 |
agcagctgccatgacagctggaccggtaaggaatctaatggccatagagaaagctgctatgcgattaccacatgctataatcctcggttgcaaagccatg |
45363280 |
T |
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| Q |
119 |
aacagacctgccatgaacagaatcataaaggaaaaggagcaaa |
161 |
Q |
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| T |
45363279 |
aacagacctgccatgaacagaatcataaaggaaaaggagcaaa |
45363237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 307 - 427
Target Start/End: Complemental strand, 25040338 - 25040218
Alignment:
| Q |
307 |
acctgaatgaaatgagtgaccaagttaggccgataatgctcgaatatgtgtttgggtttctgataagttttctccaaaccattatcaatatcagcctcgt |
406 |
Q |
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|||||||||||| | |||||||| || || || | ||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||| || |
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| T |
25040338 |
acctgaatgaaaccaaagaccaagtgagaccaattaagctagaataagtgtttggatttctgataagttttctccaaaccataatcaatataagccttgt |
25040239 |
T |
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| Q |
407 |
cattatacttgctggtggcat |
427 |
Q |
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||| | ||| ||||||||||| |
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| T |
25040238 |
catcacactagctggtggcat |
25040218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 303
Target Start/End: Complemental strand, 25040782 - 25040700
Alignment:
| Q |
221 |
accaagactgtacatggccatgccaagccctgcatctgacaatatggaaatagacttttctatgataacaggcatttcaatat |
303 |
Q |
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| T |
25040782 |
accaagactgaacatagccatgccaagtcctgcatctgacagaatggaaatagactttgctataatggcaggcatttcaatat |
25040700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 128
Target Start/End: Complemental strand, 25042082 - 25041973
Alignment:
| Q |
19 |
agcagctgccatgacagctggaccggtaaggaatctaatggccatagagaaagctgctatgcgattacctcatgctataatcctcggttgcaaagccatg |
118 |
Q |
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|||||||||||||||||||||||| ||||||||| | |||| || |||||||| ||| ||| || |||||||| || | ||||||||||||||| |
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| T |
25042082 |
agcagctgccatgacagctggaccaacaaggaatctcacacccattgaaaaagctgcaatggaatttccacatgctatgatttttggttgcaaagccatg |
25041983 |
T |
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| Q |
119 |
aacagacctg |
128 |
Q |
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|||| ||||| |
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| T |
25041982 |
aacaaacctg |
25041973 |
T |
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