View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_16 (Length: 456)
Name: NF11902_low_16
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Original strand, 46237998 - 46238431
Alignment:
| Q |
1 |
gatggacggagggctgttcaaatatatagttaattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacatccattcaacacc |
100 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
46237998 |
gatggtcggagggctgttcaaatatatagtaaattatgtttagtggatggatagtaaatataacaatatgttggagatcattaaacatccattcaacacc |
46238097 |
T |
|
| Q |
101 |
atgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaatgtttgggccaaa |
200 |
Q |
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| T |
46238098 |
atgaaccacgacttaaatgtcattaaccacgtttggaccaagcgtaaattgaagttgcctccagcaccccggtcgcagtccaacaaatgtttgggccaaa |
46238197 |
T |
|
| Q |
201 |
cctagggggaacattctcgctttaatgacatgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctca |
300 |
Q |
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| T |
46238198 |
cctagggggaacattctcgctttaatgacatgtcgacgtattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctca |
46238297 |
T |
|
| Q |
301 |
atattagcaggatctgaagtgtacacttcacttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagtactcaagcagcc |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238298 |
atattagcaggatctgaagtgtacacttcacttctattgaagctaagcaacctataaatttttcgtttgcttgtgatgtcagtcgagtactcaagcagcc |
46238397 |
T |
|
| Q |
401 |
tatgaaagttgaacagttcgtgcaagactgtgcc |
434 |
Q |
| |
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| T |
46238398 |
tatgaaagttgaacagttcgtgcaagactgtgcc |
46238431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 32 - 434
Target Start/End: Complemental strand, 46165158 - 46164755
Alignment:
| Q |
32 |
aattatgtttagtggatggatagtaaatataacaatatgttgcagatcattaaacatccattcaacaccatgaaccacgactta-aatgtcattaaccac |
130 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||| ||| ||||||| |||||| ||||||| ||||||||| |||| |||||||||| |||| |
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| T |
46165158 |
aattatgtttagtagatcgatagtaaatataacaatatgtcgcaattcattaaccatccaatcaacacaatgaaccacaactttgaatgtcatta-ccac |
46165060 |
T |
|
| Q |
131 |
gtttggaccaagcgtaaattgaagttg-cctccagcaccccggtcgcagtccaacaaatgtttgggccaaacctagggggaacattctcgctttaatgac |
229 |
Q |
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|| ||||||||| | |||| |||||| || || ||| | |||| | ||||||||| ||||||||||||||||||||||||||||| ||| | |||| |
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| T |
46165059 |
gtctggaccaagtgcaaatggaagttttccccccgcattctagtcggaatccaacaaaagtttgggccaaacctagggggaacattctatcttaagtgac |
46164960 |
T |
|
| Q |
230 |
atgtcgacttattagtaactatgagttataccttgccatagtttgagaagttcgtcgccagtatatgctcaatattagcaggatctgaagtgtacacttc |
329 |
Q |
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|| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
46164959 |
atatcgatttattagtaactacgagttataccttgccatagtttgagaagttcgtcgccatcatatgctcaatattagcaggatctgaagtgtacacttc |
46164860 |
T |
|
| Q |
330 |
acttctattgaagctaagcaacctataagtttttcgtttgcttgtgatgtcagtcgagtactcaagcagcctatgaaagttgaacagttcgtgcaagact |
429 |
Q |
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||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
46164859 |
acttctattaaagctaagcaacctataagtttttcttttgcttgtgaggtcagtcatgtactcaagcagcctatgaaagttgaacagttgatgcaagact |
46164760 |
T |
|
| Q |
430 |
gtgcc |
434 |
Q |
| |
|
||||| |
|
|
| T |
46164759 |
gtgcc |
46164755 |
T |
|
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