View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_17 (Length: 454)
Name: NF11902_low_17
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 38187596 - 38187179
Alignment:
| Q |
8 |
agatattcacatgctagcagttccttcccaagttgaatttctccataagaatttcaagcacatgaaggagaaatcgatgtctaaatggaagaaaactatc |
107 |
Q |
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|||| ||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
38187596 |
agatgttcacatgctagcaggtccttcccaagttgaattgctccataagaatttcaaggtcatgaaggagaaatcgatgtctcaatggaagaaaactatc |
38187497 |
T |
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| Q |
108 |
atcgagaagtataactatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaa |
207 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187496 |
atagagaagtataactatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaa |
38187397 |
T |
|
| Q |
208 |
ttattaagggagaggtaagacatgcattctatatatttattgcctcataatttgaagttgcatatcagtcttgcactaaatgccttctttgtgatatcac |
307 |
Q |
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| T |
38187396 |
ttattaagggagaggtaagacatgcattctatatatttattgcctcataatttcaagttgcatatcagtcttacactaaatgccttctttgtgatatcac |
38187297 |
T |
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| Q |
308 |
tggttttatacatgatctgttaatttccctagggattcattattggnnnnnnnncaactcttaagcattatgcttttagcctttgctgttctataggatg |
407 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38187296 |
tggttttagacatgatctgttaatttccctagggattcattattggtttttgttcaactcttaagcattatgcttttagcctttgctgttctataggatg |
38187197 |
T |
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| Q |
408 |
ataataactgttatatat |
425 |
Q |
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| T |
38187196 |
ataataactgttatatat |
38187179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 279
Target Start/End: Original strand, 38923307 - 38923578
Alignment:
| Q |
8 |
agatattcacatgctagcagttccttcccaagttgaatttctccataagaatttcaagcacatgaaggagaaatcgatgtctaaatggaagaaaactatc |
107 |
Q |
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|||| ||||||||| ||| | ||||||||||| |||||| ||| |||| ||||||||| |||||||||||||| || |||| || ||| | ||||| |
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| T |
38923307 |
agatgttcacatgcaagcggctccttcccaagctgaattgctctataaaaatttcaaggtcatgaaggagaaattgaagtctcaaacaaaggacactatt |
38923406 |
T |
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| Q |
108 |
atcgagaagtataactatgtagctctgaaggacccacttccaagagaacttctgctgggtcagagtgagaggcaaattctgtatgatcgcgctggtagaa |
207 |
Q |
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|| ||||||||| | ||| |||| ||||| |||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||||||||| |
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| T |
38923407 |
attgagaagtatggcaatgcagctgacgaggacaaacttccaagagaacttcttctgggtcagagtgagaggcaagttgagtatgatcgtgctggtagaa |
38923506 |
T |
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| Q |
208 |
ttattaagggagaggtaagacatgcattctatatatttattgcctcataatttgaagttgcatatcagtctt |
279 |
Q |
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| T |
38923507 |
ttgttaagggacaggtaagaaatgcattctatatctttattatctcacaatttcaatttgcatatcaatctt |
38923578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 369 - 439
Target Start/End: Original strand, 38924023 - 38924093
Alignment:
| Q |
369 |
taagcattatgcttttagcctttgctgttctataggatgataataactgttatatatttgttgcttctaat |
439 |
Q |
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||||||||||| |||||| |||||||||| ||||||||||||||||||||| ||| || |||||||||| |
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| T |
38924023 |
taagcattatgtttttaggttttgctgttcgttaggatgataataactgttatttatctgctgcttctaat |
38924093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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