View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_18 (Length: 433)

Name: NF11902_low_18
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_18
NF11902_low_18
[»] chr8 (3 HSPs)
chr8 (59-275)||(3247629-3247831)
chr8 (335-415)||(27811737-27811817)
chr8 (343-391)||(27811673-27811721)
[»] chr6 (9 HSPs)
chr6 (335-413)||(12592839-12592917)
chr6 (335-415)||(30822462-30822544)
chr6 (345-415)||(30813199-30813271)
chr6 (275-342)||(30824648-30824716)
chr6 (296-342)||(12594164-12594210)
chr6 (301-342)||(12069304-12069345)
chr6 (343-391)||(12592771-12592819)
chr6 (245-275)||(30824813-30824843)
chr6 (343-391)||(30813134-30813182)
[»] scaffold0329 (2 HSPs)
scaffold0329 (335-415)||(18714-18794)
scaffold0329 (343-401)||(18810-18868)
[»] chr1 (1 HSPs)
chr1 (335-412)||(3399926-3400003)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 59 - 275
Target Start/End: Complemental strand, 3247831 - 3247629
Alignment:
Q  59 aattaagttgtgaagaatatatatgtacattgtaaggttcataatgtgcattgtaagtcatgactcaa--aatgaattactatttatatgtagaaatatt 156  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||  |||||| ||||||||||| |||            
T  3247831 aattaaattgtgaagaatatatatgtacattgtaaggttcataatgtgcaccgcaagtcatgactcaagtaatgaaatactatttataggta-------- 3247740  T
Q  157 aggcgaaaaagaaaaacaaatgactaatttacctgttgcatcatttcctacttgttgtgaattaattctacaatattagcaaatttattaggatattgat 256  Q
        |||| || |||||||||||||||||||||||||||||||||| ||||    | | |||||||||||||||||||||||| ||| |||||||||| |    
T  3247739 ----gaaacagcaaaacaaatgactaatttacctgttgcatcatttgctac---atctaaattaattctacaatattagcaaaatta-taggatattggt 3247648  T
Q  257 agggaatgaggaaaagata 275  Q
    ||||||||| |||||||||    
T  3247647 agggaatgaagaaaagata 3247629  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 27811817 - 27811737
Alignment:
Q  335 tttgtttaaaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctttaaggtgttagt 415  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27811817 tttgtttaaaaatctcaatttccgttaatgtttctaggtgctgtagcagcgcaacattggcttttgctttaaggtgttagt 27811737  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 27811721 - 27811673
Alignment:
Q  343 aaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacat 391  Q
    ||||| |||||||| |||||||||||||| || |||||||| |||||||    
T  27811721 aaaatttcaatttctgttaatgttgctagctgatgtagcagagcaacat 27811673  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 335 - 413
Target Start/End: Complemental strand, 12592917 - 12592839
Alignment:
Q  335 tttgtttaaaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctttaaggtgtta 413  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||    
T  12592917 tttgtttaaaaatctcaattttcgttactgttgctagctgctgtagcagagcaacattggcttttgctttaaggtgtta 12592839  T

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Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 335 - 415
Target Start/End: Complemental strand, 30822544 - 30822462
Alignment:
Q  335 tttgtttaaaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctt--taaggtgttagt 415  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||  ||||||||||||    
T  30822544 tttgtttaaaaatctcaatttctgttaatgttgctaggtgctgtagcagcacaacattggctttttctttataaggtgttagt 30822462  T

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Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 345 - 415
Target Start/End: Complemental strand, 30813271 - 30813199
Alignment:
Q  345 aatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctt--taaggtgttagt 415  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||||||    
T  30813271 aatctcaatttccgttaatgttgctaggtgctgtagcagcacaacattggcttttgcttcataaggtgttagt 30813199  T

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Target: chr6; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 275 - 342
Target Start/End: Complemental strand, 30824716 - 30824648
Alignment:
Q  275 aataggtaaagtactagtgtattattatattttcaattgtgaaactttcttgc-actattctttgttta 342  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30824716 aataagtaaagtactagtgtattattatattttcaattgtgaaactttcttgcaactattctttgttta 30824648  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 296 - 342
Target Start/End: Complemental strand, 12594210 - 12594164
Alignment:
Q  296 ttattatattttcaattgtgaaactttcttgcactattctttgttta 342  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||    
T  12594210 ttattatattttcaactgtgaaactttcttgcactattctttgttta 12594164  T

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Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 342
Target Start/End: Complemental strand, 12069345 - 12069304
Alignment:
Q  301 atattttcaattgtgaaactttcttgcactattctttgttta 342  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  12069345 atattttcaattgtgaagctttcttgcactattctttgttta 12069304  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 12592819 - 12592771
Alignment:
Q  343 aaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacat 391  Q
    |||||||||||||| |||||||||||||| || |||||||| |||||||    
T  12592819 aaaatctcaatttctgttaatgttgctagctgatgtagcagagcaacat 12592771  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 275
Target Start/End: Complemental strand, 30824843 - 30824813
Alignment:
Q  245 taggatattgatagggaatgaggaaaagata 275  Q
    |||||||||||||||||||||||||||||||    
T  30824843 taggatattgatagggaatgaggaaaagata 30824813  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 391
Target Start/End: Complemental strand, 30813182 - 30813134
Alignment:
Q  343 aaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacat 391  Q
    ||||| |||||||| |||||||||||||| || |||||||| |||||||    
T  30813182 aaaatttcaatttctgttaatgttgctagctgatgtagcagagcaacat 30813134  T

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Target: scaffold0329 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 335 - 415
Target Start/End: Original strand, 18714 - 18794
Alignment:
Q  335 tttgtttaaaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctttaaggtgttagt 415  Q
    ||||||||||||||||| |||| |||||||||||||| |||| |||||| |||||||| |||||| |||||||||| ||||    
T  18714 tttgtttaaaaatctcagtttctgttaatgttgctagctgctatagcagagcaacattagcttttcctttaaggtgatagt 18794  T

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Target: scaffold0329; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 401
Target Start/End: Original strand, 18810 - 18868
Alignment:
Q  343 aaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgc 401  Q
    |||||||||||||  |||| ||||||||| | ||||||||| |||||||| ||||||||    
T  18810 aaaatctcaatttatgttattgttgctagctcctgtagcagagcaacattagcttttgc 18868  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 3400003 - 3399926
Alignment:
Q  335 tttgtttaaaaatctcaatttccgttaatgttgctaggtgctgtagcagcgcaacattggcttttgctttaaggtgtt 412  Q
    ||||| |||||||||||||||   |||| |||||||| || |||||||| || |||||  |||||||||| |||||||    
T  3400003 tttgtataaaaatctcaattttttttaacgttgctagctgttgtagcagagcgacattaacttttgctttgaggtgtt 3399926  T

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