View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_2 (Length: 887)

Name: NF11902_low_2
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_2
NF11902_low_2
[»] chr7 (12 HSPs)
chr7 (59-574)||(39299908-39300424)
chr7 (571-870)||(39301331-39301631)
chr7 (356-540)||(39247896-39248081)
chr7 (363-462)||(39196652-39196751)
chr7 (363-469)||(39218224-39218330)
chr7 (363-469)||(39225322-39225428)
chr7 (363-462)||(39179407-39179506)
chr7 (15-58)||(39262300-39262343)
chr7 (562-607)||(39253054-39253099)
chr7 (363-461)||(39240973-39241071)
chr7 (577-607)||(39248077-39248107)
chr7 (363-425)||(39258403-39258465)


Alignment Details
Target: chr7 (Bit Score: 485; Significance: 0; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 59 - 574
Target Start/End: Original strand, 39299908 - 39300424
Alignment:
Q  59 agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39299908 agaacttcccatgcctgtcataccccggtcaattggataaagctccaatggtacaaaaatcttgttcatacgtacacaaggattctgtaaatgacttgcc 39300007  T
Q  159 aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300008 aatcatgagagaatatttgatgggacatgcactgaaaaagggatgtgcccaaatcttaaaattgaaatgcttataaagggttaaaataaaatgaaatgac 39300107  T
Q  259 ttgccaatcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg 358  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300108 ttgccagtcacgagaatattgattttcttcatttctgcctaaagatacttgttcacattttcttaaataaaataaaattttacatggacttcaaaatttg 39300207  T
Q  359 tatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatctt 458  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39300208 tatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatctt 39300307  T
Q  459 cttttccattttctcctaccattgt-atgatgtttgtgaataattatgtgctgtttcaaacctctgatgaacgttcatttatatagttaagacagggaat 557  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||    
T  39300308 cttttccattttctcctaacattgtcatgatgtttgagaataattatgtgctgtttctaacctctgttgaacgttaatttatatagttaagacagggaat 39300407  T
Q  558 tatattcttcaaactaa 574  Q
    |||||||||||||||||    
T  39300408 tatattcttcaaactaa 39300424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 571 - 870
Target Start/End: Original strand, 39301331 - 39301631
Alignment:
Q  571 ctaaggttatacattaactaattgtccaattgcttgcnnnnnnn-taactagttgttatgtacgtcttgttttatcttttgttatttgtttaaaatttgt 669  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39301331 ctaaggttatacattaactaattgtccaattgcttgcaaaaaaaataactagttgttatgtacgtcttgttttatcttttgttatttgtttaaaatttgt 39301430  T
Q  670 ctcattatctccttcctatctctctgnnnnnnnatggtagcatatgtttcctttaaaatattaatgtgaaattgacaagtcacaaaatgtcattaattag 769  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39301431 ctcattatctccttcctatctctctgtttttttatggtagcatatgtttcctttaaaatattaatgtgaaattgacaagtcacaaaatgtcattaattag 39301530  T
Q  770 ctatgagtgagcaaaacaaattttgtggtgattggttttcacggaatatatttaaagatcaagagcatccggagta-aacattttattttgggggtttaa 868  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||| |||||| |||||||||    
T  39301531 ctatgagtgagcaaaacaaattttgtggtgattggttttca-ggaatatatttaaagatcaagagcatccagagtagaacattgtattttaggggtttaa 39301629  T
Q  869 gc 870  Q
    ||    
T  39301630 gc 39301631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 356 - 540
Target Start/End: Original strand, 39247896 - 39248081
Alignment:
Q  356 ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat 455  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39247896 ttgtatatacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataat 39247995  T
Q  456 cttcttttccattttctcctaccattgt-atgatgtttgtgaataattatgtgctgtttcaaacctctgatgaacgttcatttata 540  Q
    ||||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| |||||||| |||||||| |||||||    
T  39247996 cttcttttccattttctcctaacattgtcatgatgtttgagaataattatgtgctgtttctaacctctgttgaacgttaatttata 39248081  T

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Target: chr7; HSP #4
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 39196652 - 39196751
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 462  Q
    |||||||||||||||| |||||| |||||| ||| || |||||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  39196652 tacctactatgaaggagcaagctttccatcgtccagtttttgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatcttcttt 39196751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 39218224 - 39218330
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 462  Q
    |||||||||||||||| |||||| |||||| ||| || || ||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  39218224 tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatcttcttt 39218323  T
Q  463 tccattt 469  Q
     ||||||    
T  39218324 cccattt 39218330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 363 - 469
Target Start/End: Original strand, 39225322 - 39225428
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 462  Q
    |||||||||||||||| |||||| |||||| ||| || || ||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||||||||    
T  39225322 tacctactatgaaggagcaagctttccatcgtccagtcttcgatcttaaaacaggtctaccttttaggtctactgtaccatcttgagtgtaatcttcttt 39225421  T
Q  463 tccattt 469  Q
     ||||||    
T  39225422 cccattt 39225428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 363 - 462
Target Start/End: Original strand, 39179407 - 39179506
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttcttt 462  Q
    |||||||||| ||||| |||||| |||||||||| || |||||||||||||  ||||||||||| ||||| ||||| ||||| | ||| |||||||||||    
T  39179407 tacctactataaaggagcaagctttccatcttccagtctttgatcttaaaatgggtctaccttttaggtctactgttccatcctgagtgtaatcttcttt 39179506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 39262300 - 39262343
Alignment:
Q  15 atgaacaaggggacaagttgagtgagcaagaccgatacaagctt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  39262300 atgaacaaggggacaagttgagtgagcaagaccgatacaagctt 39262343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 562 - 607
Target Start/End: Original strand, 39253054 - 39253099
Alignment:
Q  562 ttcttcaaactaaggttatacattaactaattgtccaattgcttgc 607  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||    
T  39253054 ttcttcaaactaaggttatacatgaactaattgtccaattgcttgc 39253099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 363 - 461
Target Start/End: Original strand, 39240973 - 39241071
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctttaaggtccactgtcccatcttcagtataatcttctt 461  Q
    ||||||| | ||||||||||||| ||||| |||| || |||||||||||||||||||| ||||  |  || ||||| ||||||| ||| ||||||||||    
T  39240973 tacctacaaggaaggaacaagctttccatgttccagtctttgatcttaaaactggtctgccttgtaaatctactgttccatcttgagtgtaatcttctt 39241071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 577 - 607
Target Start/End: Original strand, 39248077 - 39248107
Alignment:
Q  577 ttatacattaactaattgtccaattgcttgc 607  Q
    |||||||||||||||||||||||||||||||    
T  39248077 ttatacattaactaattgtccaattgcttgc 39248107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 363 - 425
Target Start/End: Original strand, 39258403 - 39258465
Alignment:
Q  363 tacctactatgaaggaacaagctctccatcttcctgtatttgatcttaaaactggtctacctt 425  Q
    |||||||||| || || |||||| |||||||||| || |||||||||||||| ||| ||||||    
T  39258403 tacctactataaaagagcaagctttccatcttccggtctttgatcttaaaaccggtttacctt 39258465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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