View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_23 (Length: 382)

Name: NF11902_low_23
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_23
NF11902_low_23
[»] chr7 (13 HSPs)
chr7 (15-382)||(35523085-35523445)
chr7 (329-374)||(26980951-26980996)
chr7 (329-382)||(29726801-29726854)
chr7 (327-374)||(15015240-15015287)
chr7 (343-382)||(24099242-24099281)
chr7 (329-367)||(23177943-23177981)
chr7 (329-375)||(25251511-25251557)
chr7 (19-53)||(35517805-35517839)
chr7 (329-375)||(38911300-38911346)
chr7 (334-375)||(19684226-19684267)
chr7 (329-382)||(23221393-23221446)
chr7 (333-382)||(27279410-27279459)
chr7 (343-375)||(10095395-10095427)
[»] chr4 (16 HSPs)
chr4 (329-382)||(52936642-52936695)
chr4 (329-382)||(47704583-47704636)
chr4 (325-382)||(48171878-48171935)
chr4 (329-374)||(50380851-50380896)
chr4 (329-382)||(53530010-53530063)
chr4 (328-375)||(34942425-34942472)
chr4 (331-382)||(34960164-34960215)
chr4 (333-371)||(37970192-37970230)
chr4 (329-379)||(40160799-40160849)
chr4 (329-374)||(6459939-6459984)
chr4 (329-374)||(32923245-32923290)
chr4 (333-370)||(40614404-40614441)
chr4 (333-382)||(50668345-50668394)
chr4 (329-382)||(51465338-51465391)
chr4 (328-372)||(8415512-8415556)
chr4 (339-375)||(48251922-48251958)
[»] chr8 (15 HSPs)
chr8 (331-377)||(18422465-18422511)
chr8 (328-382)||(13284272-13284326)
chr8 (329-382)||(36919312-36919365)
chr8 (329-382)||(42932235-42932288)
chr8 (320-374)||(574376-574430)
chr8 (329-379)||(31085874-31085924)
chr8 (329-374)||(1877677-1877722)
chr8 (329-382)||(3650521-3650574)
chr8 (329-374)||(29293178-29293223)
chr8 (333-377)||(3456833-3456877)
chr8 (333-373)||(5830313-5830353)
chr8 (329-377)||(9639999-9640047)
chr8 (329-377)||(20469323-20469371)
chr8 (333-377)||(24202156-24202200)
chr8 (325-377)||(40392055-40392107)
[»] chr3 (7 HSPs)
chr3 (329-382)||(2563930-2563983)
chr3 (331-382)||(47040901-47040952)
chr3 (334-372)||(4033426-4033464)
chr3 (329-382)||(29791777-29791830)
chr3 (328-377)||(53221958-53222007)
chr3 (339-375)||(25289327-25289363)
chr3 (339-375)||(49088763-49088799)
[»] chr1 (10 HSPs)
chr1 (317-374)||(5553016-5553073)
chr1 (329-382)||(15382826-15382879)
chr1 (333-382)||(4806802-4806851)
chr1 (329-382)||(13401598-13401651)
chr1 (339-374)||(3528484-3528519)
chr1 (329-382)||(3777719-3777772)
chr1 (329-374)||(16580814-16580859)
chr1 (329-374)||(32950776-32950821)
chr1 (329-369)||(28213914-28213954)
chr1 (326-382)||(52262173-52262229)
[»] chr5 (8 HSPs)
chr5 (333-374)||(24443114-24443155)
chr5 (329-375)||(29962359-29962405)
chr5 (329-375)||(30012393-30012439)
chr5 (331-376)||(12159414-12159459)
chr5 (333-382)||(29695020-29695069)
chr5 (329-382)||(37791170-37791223)
chr5 (329-374)||(42515808-42515853)
chr5 (338-382)||(25709743-25709787)
[»] chr6 (8 HSPs)
chr6 (329-377)||(23635726-23635774)
chr6 (328-378)||(1804098-1804148)
chr6 (334-372)||(26611057-26611095)
chr6 (329-382)||(6470623-6470676)
chr6 (329-374)||(13496117-13496162)
chr6 (329-382)||(28046185-28046238)
chr6 (350-382)||(2105927-2105959)
chr6 (329-377)||(12904329-12904377)
[»] chr2 (9 HSPs)
chr2 (339-379)||(3196571-3196611)
chr2 (331-377)||(19159944-19159990)
chr2 (329-375)||(29896308-29896354)
chr2 (329-375)||(41682401-41682447)
chr2 (329-374)||(12893259-12893304)
chr2 (333-374)||(31166122-31166163)
chr2 (329-382)||(37320524-37320577)
chr2 (333-374)||(41853370-41853411)
chr2 (341-382)||(43305916-43305957)
[»] scaffold0053 (1 HSPs)
scaffold0053 (333-382)||(14205-14254)


Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 382
Target Start/End: Complemental strand, 35523445 - 35523085
Alignment:
Q  15 atattgtgcaccaaactctcttgttttttgctgctgatattatgcataagccaaagtatttcttttaataacaaaagttaggatatacattgttttnnnn 114  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  35523445 atattgtgcaccaaactctcttgttttgtgctgctgatattatgcataagccaaagtatttcttttaataacaaaagttaggatatacattgttttaaaa 35523346  T
Q  115 nnnnnntatattactatataagttggtcatatgacgtgggtagaaaatagaatactaacttccagggtaaagtattaatttggtcaaaaaagaagtatta 214  Q
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35523345 aaaaaa-atattagtatataagttggtcatatgacgtgggtagaaaatagaatactaacttccagggtaaagtattaatttggtcaaaaaagaagtatta 35523247  T
Q  215 atttggtcaacnnnnnnnnnttttcaaggtaaagcattaatt---attattatttaatttaaaggatacatttcatactgttaataccatttaatagatg 311  Q
    |||||||||||          || ||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||| ||||             
T  35523246 atttggtcaacaaaaaaaaaattccaaggtaaagcattaattatcattattatttaatttaaaggatacatttcatactgttaatatcatt--------- 35523156  T
Q  312 agtaatagatgtgcttatgagcttaattcagttgatataaacaatgtata--atatatgtaaggttcgaggtt 382  Q
      |||||||||| || ||||||||||||||||||||||||||||||||||  |||||| ||||||||||||||    
T  35523155 --taatagatgtcctcatgagcttaattcagttgatataaacaatgtataatatatatataaggttcgaggtt 35523085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 26980996 - 26980951
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  26980996 tgagcttaactcagttgatatgaacaatgtatattatatgtaaggt 26980951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 29726801 - 29726854
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||||| || |||||||||||||||||| |||||||| ||||    
T  29726801 tgagcttaactcagttgacatgaacaatgtataatatatgcaaggttcggggtt 29726854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 374
Target Start/End: Original strand, 15015240 - 15015287
Alignment:
Q  327 tatgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||||| ||||||||||  ||||||| ||||||||||||||||    
T  15015240 tatgagcttaactcagttgataagaacaatgcataatatatgtaaggt 15015287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 343 - 382
Target Start/End: Complemental strand, 24099281 - 24099242
Alignment:
Q  343 ttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  24099281 ttgatataaacaatgcataatatatgtaaggttcggggtt 24099242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 367
Target Start/End: Original strand, 23177943 - 23177981
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatat 367  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  23177943 tgagcttaattcggttgatataaataatgtataatatat 23177981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 25251511 - 25251557
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||| ||||||| ||||||||||| ||||||||| |||||||    
T  25251511 tgagcttaactcagttggtataaacaatgcataatatatataaggtt 25251557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 35517839 - 35517805
Alignment:
Q  19 tgtgcaccaaactctcttgttttttgctgctgata 53  Q
    ||||||||||||||||||||||| |||||||||||    
T  35517839 tgtgcaccaaactctcttgttttgtgctgctgata 35517805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 38911300 - 38911346
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||| |||||||||| | ||||||||||||||||| ||||||    
T  38911300 tgagcttaactcagttgataaagacaatgtataatatatgcaaggtt 38911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 334 - 375
Target Start/End: Complemental strand, 19684267 - 19684226
Alignment:
Q  334 ttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    |||| |||||||||||| |||||| |||||||||||||||||    
T  19684267 ttaactcagttgatatagacaatgcataatatatgtaaggtt 19684226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 23221393 - 23221446
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||| || | |||||| ||||||||||||||||||| ||||    
T  23221393 tgagcttaactcagttggtagagacaatgcataatatatgtaaggttcgtggtt 23221446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 27279459 - 27279410
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||| |||||||  |||| |||||||||||||||||||||||| ||||||    
T  27279459 cttagttcagttagtatagacaatgtataatatatgtaaggtttgaggtt 27279410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 343 - 375
Target Start/End: Complemental strand, 10095427 - 10095395
Alignment:
Q  343 ttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||| |||||||||||||||||||||||||    
T  10095427 ttgatatgaacaatgtataatatatgtaaggtt 10095395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 52936642 - 52936695
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||||||| |||||||||||||||||||||||||| ||||||    
T  52936642 tgagcttaactcagttgatagaaacaatgtataatatatgtaaggtttgaggtt 52936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 47704583 - 47704636
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||| ||| || |||||||||||||||||||||||||||||    
T  47704583 tgagcttaactcagttggtatgaataatgtataatatatgtaaggttcgaggtt 47704636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 325 - 382
Target Start/End: Original strand, 48171878 - 48171935
Alignment:
Q  325 cttatgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||| ||||||| || | ||||||||||||||||| ||||||| |||||    
T  48171878 cttatgagcttaactcagttggtagagacaatgtataatatatgcaaggttctaggtt 48171935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 50380896 - 50380851
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||||||||||| ||| ||||||| ||||||||||||||||    
T  50380896 tgagcttaattcagttggtatgaacaatgcataatatatgtaaggt 50380851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 53530010 - 53530063
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||| ||| |||||||| |||||||||||||||| |||||||    
T  53530010 tgagcttaactcagttaataaaaacaatgcataatatatgtaaggtccgaggtt 53530063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 375
Target Start/End: Complemental strand, 34942472 - 34942425
Alignment:
Q  328 atgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||| |||||||| || | ||||||||||||||||||||||||    
T  34942472 atgagcttagttcagttggtagagacaatgtataatatatgtaaggtt 34942425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 34960215 - 34960164
Alignment:
Q  331 agcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||| ||||||| ||||||||||| ||||||||| |||| |||||||||    
T  34960215 agcttaactcagttggtataaacaatgcataatatatataagattcgaggtt 34960164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 333 - 371
Target Start/End: Complemental strand, 37970230 - 37970192
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaa 371  Q
    ||||||||||||| |||||| ||||||||||||||||||    
T  37970230 cttaattcagttggtataaaaaatgtataatatatgtaa 37970192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 379
Target Start/End: Original strand, 40160799 - 40160849
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgag 379  Q
    ||||||||||||||||| |||| |||| | |||||||||||||||| ||||    
T  40160799 tgagcttaattcagttggtatagacaacgcataatatatgtaaggtccgag 40160849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 6459984 - 6459939
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| |||||||||||  |||||| ||||||||||||||||    
T  6459984 tgagcttaactcagttgatatggacaatgcataatatatgtaaggt 6459939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 32923290 - 32923245
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| ||||||| ||| ||||||| ||||||||||||||||    
T  32923290 tgagcttaactcagttggtatgaacaatgcataatatatgtaaggt 32923245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 370
Target Start/End: Original strand, 40614404 - 40614441
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgta 370  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  40614404 cttaattcagttgttatgaacaatgtataatatatgta 40614441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 50668345 - 50668394
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||| ||| ||||||  ||||||||||||||||||| ||||    
T  50668345 cttaattcagttggtatgaacaatacataatatatgtaaggttcggggtt 50668394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 51465338 - 51465391
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||||||| |||  |||||| ||||||||||||||| ||| ||||    
T  51465338 tgagcttaattcagttggtatggacaatgcataatatatgtaagggtcggggtt 51465391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 328 - 372
Target Start/End: Complemental strand, 8415556 - 8415512
Alignment:
Q  328 atgagcttaattcagttgatataaacaatgtataatatatgtaag 372  Q
    |||||||||||||||||| |||  |||||| ||||||||||||||    
T  8415556 atgagcttaattcagttggtatggacaatgcataatatatgtaag 8415512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 48251958 - 48251922
Alignment:
Q  339 tcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  48251958 tcagttgatatgaacaatgtataatatatgcaaggtt 48251922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 377
Target Start/End: Complemental strand, 18422511 - 18422465
Alignment:
Q  331 agcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||    
T  18422511 agcttaattcagttgatagaaacaatgcataatatatgtaaggttcg 18422465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 382
Target Start/End: Complemental strand, 13284326 - 13284272
Alignment:
Q  328 atgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||| |||| ||||||||||| ||||||||||||||||| ||||||| ||||||    
T  13284326 atgagtttaactcagttgatatgaacaatgtataatatatataaggtttgaggtt 13284272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 36919312 - 36919365
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||| ||  |||||||||||||||||||||||||| |||||    
T  36919312 tgagcttaactcagttggtaagaacaatgtataatatatgtaaggttcaaggtt 36919365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 42932288 - 42932235
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||| ||| |||| ||| ||||||||||||||||||||||||||||| ||||||    
T  42932288 tgagtttagttcacttggtataaacaatgtataatatatgtaaggtttgaggtt 42932235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 320 - 374
Target Start/End: Original strand, 574376 - 574430
Alignment:
Q  320 atgtgcttatgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    |||| ||| ||||||||  |||||||||||| |||||| ||||||||||||||||    
T  574376 atgtccttgtgagcttagctcagttgatatagacaatgcataatatatgtaaggt 574430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 31085924 - 31085874
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgag 379  Q
    ||||||||  ||||||||||| ||||||||||||| |||||||||| ||||    
T  31085924 tgagcttagctcagttgatatgaacaatgtataatgtatgtaaggtccgag 31085874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 1877722 - 1877677
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| |||||||||||| |||||| |||||||||| |||||    
T  1877722 tgagcttaactcagttgatatagacaatgcataatatatgcaaggt 1877677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 3650521 - 3650574
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||| || ||| |||| ||||||||||||||||||| ||||    
T  3650521 tgagcttaactcagttggtagaaaaaatgcataatatatgtaaggttcggggtt 3650574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 29293178 - 29293223
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| |||||| ||||| ||||| |||||||||||||||||    
T  29293178 tgagcttaactcagttaatatagacaatatataatatatgtaaggt 29293223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 3456877 - 3456833
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||| ||| ||||||| ||||||| |||||||||||||||||||    
T  3456877 cttaactcaattgatatgaacaatgcataatatatgtaaggttcg 3456833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 373
Target Start/End: Complemental strand, 5830353 - 5830313
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaagg 373  Q
    ||||||| ||||| ||| |||||||||||||||||||||||    
T  5830353 cttaatttagttggtatgaacaatgtataatatatgtaagg 5830313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Original strand, 9639999 - 9640047
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||| ||||||| || |||||| | |||||||||||||||||||    
T  9639999 tgagcttaactcagttgttagaaacaacgaataatatatgtaaggttcg 9640047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 20469371 - 20469323
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||  ||||||| ||||||||||| |||||||||| ||||||||    
T  20469371 tgagcttagatcagttggtataaacaatgcataatatatgcaaggttcg 20469323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 24202156 - 24202200
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||||||| ||||||||||  ||||||||| |||||||||    
T  24202156 cttaattcagttggtataaacaatacataatatatataaggttcg 24202200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 40392107 - 40392055
Alignment:
Q  325 cttatgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||||||  ||||||| ||| ||||||| |||||||||| ||||||||    
T  40392107 cttatgagcttacctcagttggtatgaacaatggataatatatgcaaggttcg 40392055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 2563930 - 2563983
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||||||| ||| |||| ||||||||||||||||||||||||    
T  2563930 tgagcttaactcagttgataaaaataatgaataatatatgtaaggttcgaggtt 2563983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 47040952 - 47040901
Alignment:
Q  331 agcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||| |||||||||||| ||||||| ||||| ||||||||||||| ||||    
T  47040952 agcttagttcagttgatatgaacaatgcataatgtatgtaaggttcggggtt 47040901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 4033426 - 4033464
Alignment:
Q  334 ttaattcagttgatataaacaatgtataatatatgtaag 372  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  4033426 ttaattcagttgatatgaacaatgcataatatatgtaag 4033464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 29791777 - 29791830
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||| |||| |||||||||| |||||||  ||||||||||||||||| ||||||    
T  29791777 tgagtttaactcagttgatagaaacaatacataatatatgtaaggtttgaggtt 29791830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 377
Target Start/End: Original strand, 53221958 - 53222007
Alignment:
Q  328 atgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    |||| ||||| ||||||||||   ||||||||||||||||||||||||||    
T  53221958 atgaacttaactcagttgataaggacaatgtataatatatgtaaggttcg 53222007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 25289363 - 25289327
Alignment:
Q  339 tcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||| || ||||||||||||||||||||||||||    
T  25289363 tcagttggtaaaaacaatgtataatatatgtaaggtt 25289327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 375
Target Start/End: Original strand, 49088763 - 49088799
Alignment:
Q  339 tcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  49088763 tcagttgatataaacaatgcataaaatatgtaaggtt 49088799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 5553073 - 5553016
Alignment:
Q  317 tagatgtgcttatgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||| ||| || |||||| ||||||||||| ||||||||||||||||||||||||    
T  5553073 tagatgtccttgtgggcttaactcagttgatatgaacaatgtataatatatgtaaggt 5553016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 15382879 - 15382826
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||||||| |||||||||||||||||| ||||| |||||||    
T  15382879 tgagcttaactcagttgatatgaacaatgtataatatatgcaaggtccgaggtt 15382826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 382
Target Start/End: Complemental strand, 4806851 - 4806802
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||| || | |||||||||||||||||||||||| ||||||    
T  4806851 cttaattcagttggtagagacaatgtataatatatgtaaggtttgaggtt 4806802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 13401598 - 13401651
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||||| ||||||||||| | |||||| ||||||||||||||||||| ||||    
T  13401598 tgagcttagttcagttgatagagacaatgcataatatatgtaaggttcggggtt 13401651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 339 - 374
Target Start/End: Complemental strand, 3528519 - 3528484
Alignment:
Q  339 tcagttgatataaacaatgtataatatatgtaaggt 374  Q
    |||||||||| |||||||||||||||||||||||||    
T  3528519 tcagttgatagaaacaatgtataatatatgtaaggt 3528484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Original strand, 3777719 - 3777772
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||||||||  | ||||||||||||||  |||||||||||||    
T  3777719 tgagcttaactcagttgatatggataatgtataatatatacaaggttcgaggtt 3777772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 16580859 - 16580814
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||||||||||| |||  ||||||||||||||||| |||||    
T  16580859 tgagcttaattcagttggtatggacaatgtataatatatgcaaggt 16580814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 32950821 - 32950776
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| ||||||| ||||||||||| |||||||||| |||||    
T  32950821 tgagcttaactcagttggtataaacaatgcataatatatgcaaggt 32950776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 369
Target Start/End: Original strand, 28213914 - 28213954
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgt 369  Q
    |||||||||||||||||||||| | ||| ||||||||||||    
T  28213914 tgagcttaattcagttgatatacataatatataatatatgt 28213954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 326 - 382
Target Start/End: Complemental strand, 52262229 - 52262173
Alignment:
Q  326 ttatgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||||||||| ||||||| ||| ||||||| |||| ||||| || ||||||||||    
T  52262229 ttatgagcttaactcagttggtatgaacaatgcataaaatatgcaaagttcgaggtt 52262173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 24443155 - 24443114
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||||||||||||||||||| ||||||||| ||||||    
T  24443155 cttaattcagttgatataaacaatgcataatatatataaggt 24443114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Original strand, 29962359 - 29962405
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||  |||||||||| ||||||||||||||||||| ||||||    
T  29962359 tgagcttagctcagttgatagaaacaatgtataatatatgcaaggtt 29962405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 30012439 - 30012393
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||  |||||||||| ||||||||||||||||||| ||||||    
T  30012439 tgagcttagctcagttgatagaaacaatgtataatatatgcaaggtt 30012393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 12159459 - 12159414
Alignment:
Q  331 agcttaattcagttgatataaacaatgtataatatatgtaaggttc 376  Q
    ||||||| ||||||| || | |||||||||||||||||||||||||    
T  12159459 agcttaactcagttggtagagacaatgtataatatatgtaaggttc 12159414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 29695020 - 29695069
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||| ||||    
T  29695020 cttaactcagttgatatggacaatgcataatatatgtaaggttcgtggtt 29695069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 37791223 - 37791170
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||||| |||||||| || |||||| | |||||||||| |||||||||||||    
T  37791223 tgagcttagttcagttggtagaaacaacgcataatatatgcaaggttcgaggtt 37791170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 42515808 - 42515853
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||||||||||| |||  |||||| ||||||||||||||||    
T  42515808 tgagcttaattcagttggtatggacaatgcataatatatgtaaggt 42515853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 25709743 - 25709787
Alignment:
Q  338 ttcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||| |||||||| |||||||||| ||||| |||||||    
T  25709743 ttcagttgataaaaacaatgcataatatatgcaaggtccgaggtt 25709787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 23635774 - 23635726
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||  |||||||||||| |||||| |||||||||||||||||||    
T  23635774 tgagcttatctcagttgatatatacaatgcataatatatgtaaggttcg 23635726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 328 - 378
Target Start/End: Original strand, 1804098 - 1804148
Alignment:
Q  328 atgagcttaattcagttgatataaacaatgtataatatatgtaaggttcga 378  Q
    |||| ||||| |||||||||||| ||| |||||||||||||||||| ||||    
T  1804098 atgaacttaactcagttgatatacacattgtataatatatgtaaggatcga 1804148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 26611095 - 26611057
Alignment:
Q  334 ttaattcagttgatataaacaatgtataatatatgtaag 372  Q
    |||||||||||||||| ||||||| ||||||||||||||    
T  26611095 ttaattcagttgatatgaacaatgcataatatatgtaag 26611057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 6470676 - 6470623
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| |||||||||| | |||||| |||||||||||||| |||| ||||    
T  6470676 tgagcttaactcagttgataaagacaatgcataatatatgtaagtttcggggtt 6470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Original strand, 13496117 - 13496162
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||| ||||||||||| ||||||| |||||||||| |||||    
T  13496117 tgagcttaactcagttgatatgaacaatgcataatatatgcaaggt 13496162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 28046238 - 28046185
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||||| ||||||||||| | |||||| |||||||||| |||||| ||||||    
T  28046238 tgagcttagttcagttgataaagacaatgcataatatatgcaaggtttgaggtt 28046185  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 350 - 382
Target Start/End: Original strand, 2105927 - 2105959
Alignment:
Q  350 aaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||||||| ||||||||||||||||||||||||    
T  2105927 aaacaatgcataatatatgtaaggttcgaggtt 2105959  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 329 - 377
Target Start/End: Complemental strand, 12904377 - 12904329
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||||  ||||||||||| ||||||| |||||||||| ||||||||    
T  12904377 tgagcttacctcagttgatatgaacaatgcataatatatgcaaggttcg 12904329  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 379
Target Start/End: Original strand, 3196571 - 3196611
Alignment:
Q  339 tcagttgatataaacaatgtataatatatgtaaggttcgag 379  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  3196571 tcagttgatatgaacaatgcataatatatgtaaggttcgag 3196611  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 331 - 377
Target Start/End: Original strand, 19159944 - 19159990
Alignment:
Q  331 agcttaattcagttgatataaacaatgtataatatatgtaaggttcg 377  Q
    ||||||| ||||||||||| ||||||| |||||||||| ||||||||    
T  19159944 agcttaactcagttgatatgaacaatgcataatatatgcaaggttcg 19159990  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 29896354 - 29896308
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    |||| ||||||||||||||| |||||||| |||||||||| ||||||    
T  29896354 tgagtttaattcagttgatagaaacaatgcataatatatgcaaggtt 29896308  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 41682447 - 41682401
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggtt 375  Q
    ||||||||| ||||||| |||||| |||| |||||||||||||||||    
T  41682447 tgagcttaactcagttggtataaataatgcataatatatgtaaggtt 41682401  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 374
Target Start/End: Complemental strand, 12893304 - 12893259
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||||||  ||||||||||  ||||||||||||||||||||||||    
T  12893304 tgagcttagctcagttgataagaacaatgtataatatatgtaaggt 12893259  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 31166163 - 31166122
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    |||||||||||||||| | | |||||||||||||||||||||    
T  31166163 cttaattcagttgatagagataatgtataatatatgtaaggt 31166122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 382
Target Start/End: Complemental strand, 37320577 - 37320524
Alignment:
Q  329 tgagcttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||| ||||||| || | |||||| |||||||||| |||||||||||||    
T  37320577 tgagcttaactcagttggtaaagacaatgcataatatatgcaaggttcgaggtt 37320524  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 374
Target Start/End: Original strand, 41853370 - 41853411
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggt 374  Q
    ||||| |||| |||||||||||||| ||||||||||||||||    
T  41853370 cttaactcagctgatataaacaatgcataatatatgtaaggt 41853411  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 341 - 382
Target Start/End: Complemental strand, 43305957 - 43305916
Alignment:
Q  341 agttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    |||| ||| |||||||||||||||||| ||||||||||||||    
T  43305957 agttaatagaaacaatgtataatatatataaggttcgaggtt 43305916  T

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Target: scaffold0053 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 333 - 382
Target Start/End: Original strand, 14205 - 14254
Alignment:
Q  333 cttaattcagttgatataaacaatgtataatatatgtaaggttcgaggtt 382  Q
    ||||||||||||||||  ||||||  ||||||||||||||||| ||||||    
T  14205 cttaattcagttgatagtaacaatacataatatatgtaaggtttgaggtt 14254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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