View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11902_low_28 (Length: 298)
Name: NF11902_low_28
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_28 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 27813425 - 27813707
Alignment:
| Q |
1 |
aaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaaaaatctaaaa-----gtatgcaat |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
27813425 |
aaatcatttataagcagatataggataaagagcttaattaatcttaaattaatcaaaatctgcgactaacaacaaacaatctaaaaccagagtatgcaat |
27813524 |
T |
|
| Q |
96 |
attatcaatgcaaacagaaaggatacctttacgctattagaggtttctaatagctcctcttaaaactatttcagaaagttatcaatatttcaggtaaagt |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27813525 |
attatcaatgcaaacagaaaggatacctttacactattggaggtttctaatagctc---ttaaaactatttcagaaagttatcaatatttcaggtaaagt |
27813621 |
T |
|
| Q |
196 |
tatctactgcagtggcaccacataacaaaatctgccccgaccaatgtacacaagtatcctttcgtctctgatagccaccactgtcg |
281 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
27813622 |
tatctactgcagtggcactacataacaaaatcagccccgaccaatgtacacaagtatcctttcggctctgatagccaccactgtcg |
27813707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 278
Target Start/End: Original strand, 31481696 - 31481774
Alignment:
| Q |
201 |
actgcagtggcaccacataacaaaatctgcc-ccgaccaatgtacacaagtatcctttcgtctctgatagccaccactg |
278 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| || |||| || ||||||||||| |
|
|
| T |
31481696 |
actgcagtggcaccacataacaaaatcagcctccgaccaatgtacacaatcgtcctctcctctccgagagccaccactg |
31481774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 129
Target Start/End: Original strand, 6761839 - 6761872
Alignment:
| Q |
96 |
attatcaatgcaaacagaaaggatacctttacgc |
129 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
6761839 |
attatcaatgcaaacagaaagggtacctttacgc |
6761872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University