View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_3 (Length: 777)
Name: NF11902_low_3
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 760
Target Start/End: Complemental strand, 13657355 - 13656606
Alignment:
| Q |
13 |
agaagaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagta |
112 |
Q |
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||||||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
13657355 |
agaagaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgta |
13657256 |
T |
|
| Q |
113 |
tggggcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||| |
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| T |
13657255 |
tggggcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaa |
13657156 |
T |
|
| Q |
211 |
tttaatgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtg |
310 |
Q |
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| T |
13657155 |
tctaatgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtg |
13657056 |
T |
|
| Q |
311 |
tattgatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactat |
410 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13657055 |
tattgatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactat |
13656956 |
T |
|
| Q |
411 |
catcttattttggatgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctata |
510 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656955 |
catcttattttggattaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctata |
13656856 |
T |
|
| Q |
511 |
tcaacacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatag |
610 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656855 |
tcaacacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatag |
13656756 |
T |
|
| Q |
611 |
tttatgtttgttggtggacctaattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagct |
710 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656755 |
tttatgtttgttggtggacataattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagct |
13656656 |
T |
|
| Q |
711 |
gtacggtaccatattattgtagtggtgtcacatgcagcagagattgattt |
760 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13656655 |
gtacggtaccatattattgtagtggtgtcacatgcagcagagattgattt |
13656606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 13 - 760
Target Start/End: Complemental strand, 13715997 - 13715248
Alignment:
| Q |
13 |
agaagaacatgaacttagaagaaagaagacatctaaaaatacaattttaagtttggctcgtccgtctttttattttgaagtcataaatatcatctgagta |
112 |
Q |
| |
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||||||||||||| ||||||||||||||| || | | ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
13715997 |
agaagaacatgaagttagaagaaagaagatgtccagatatacaattttatgtttggctcgtccgtctttttattttaaagtcataaatatcatctgtgta |
13715898 |
T |
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| Q |
113 |
tggggcagagccaacccaaattttattaaaagtaagtgatgcctaaagtaagattcaatacattagccnnnnnnnn--gttagaattattgtttgtaaaa |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||| |||||||||||||||||||||| |
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| T |
13715897 |
tggggcagagccaacccaaattttattaaaagtaagtgatgcttaaagtaaaattcaatatatgagccttttttttttgttagaattattgtttgtaaaa |
13715798 |
T |
|
| Q |
211 |
tttaatgaaaaataatttttgttggtagatctaaatcagaggctttggtaaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtg |
310 |
Q |
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| |||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715797 |
tctaatgaaaaataatttctgttggtagatctaaatcagagactttggtgaccttactcttaggccgaccctcgtgtgggggcacaacttaaattttgtg |
13715698 |
T |
|
| Q |
311 |
tattgatacacaaatgactgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaaaaccatgcatgcttgaacactat |
410 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13715697 |
tattgatacacaaatgagtgattactactgccatggtcaacatgtccaccactttgtgtcgtgtaccattgctgcaataccatgcatgcttgaacactat |
13715598 |
T |
|
| Q |
411 |
catcttattttggatgaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctata |
510 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715597 |
catcttattttggattaccaatctcatgcattgtaaaattcattcaaaccatcatgaataggaaaactaaaataacgaaaaacactatttttctcctata |
13715498 |
T |
|
| Q |
511 |
tcaacacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatag |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715497 |
tcaacacattggtttccactttcaatgtcaccaccaccaccctaaaaagtcacataacattacatagttacccctatttatgattcaccttttattatag |
13715398 |
T |
|
| Q |
611 |
tttatgtttgttggtggacctaattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagct |
710 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715397 |
tttatgtttgttggtggacataattcctgtttgcagattttaggtctacaatcggtattgtagttgaatataaagcctttgaaagctgaaacatacagct |
13715298 |
T |
|
| Q |
711 |
gtacggtaccatattattgtagtggtgtcacatgcagcagagattgattt |
760 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13715297 |
gtacggtaccatattattgtagtggtgtcacatgcagcagagattgattt |
13715248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Original strand, 26765152 - 26765191
Alignment:
| Q |
206 |
taaaatttaatgaaaaataatttttgttggtagatctaaa |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||| |
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| T |
26765152 |
taaaatttaatgaaaaataatttttgttggtgggtctaaa |
26765191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 18732352 - 18732314
Alignment:
| Q |
199 |
ttgtttgtaaaatttaatgaaaaataat-ttttgttggt |
236 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||| |
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| T |
18732352 |
ttgtttgtaaaatttaatgaaaaataatgttttgttggt |
18732314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 232
Target Start/End: Original strand, 41872428 - 41872461
Alignment:
| Q |
199 |
ttgtttgtaaaatttaatgaaaaataatttttgt |
232 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| |
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| T |
41872428 |
ttgtttataaaatttaatgaaaaataatttttgt |
41872461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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