View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_32 (Length: 264)
Name: NF11902_low_32
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_32 |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 867173 - 867012
Alignment:
| Q |
55 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
867173 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
867074 |
T |
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| Q |
155 |
ctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattccct |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
867073 |
ctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattccct |
867012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 1228450 - 1228289
Alignment:
| Q |
55 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228450 |
ctcatcactcgtcagagctgtgtgagtcaaacaaaccactgaaacgcaaaaatgcttcaaccccgttccctccgcccttacatttccatctcctcaaacc |
1228351 |
T |
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| Q |
155 |
ctaaccctaaccctaatcctagagacacattttctcgtttcaactccaacaatgaattccct |
216 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1228350 |
ctaaccctaaccctaaccctagagacacattttctcgtttcaactccaacaatgaattccct |
1228289 |
T |
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