View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11902_low_37 (Length: 251)
Name: NF11902_low_37
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11902_low_37 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 251
Target Start/End: Complemental strand, 31100147 - 31099910
Alignment:
| Q |
14 |
agagaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatac |
113 |
Q |
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| T |
31100147 |
agagaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatac |
31100048 |
T |
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| Q |
114 |
acacagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgag |
213 |
Q |
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| T |
31100047 |
acacagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgag |
31099948 |
T |
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| Q |
214 |
gtcagcttacactccgctggtatcggagcatcaaggtc |
251 |
Q |
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| T |
31099947 |
gtcagcttacactccgctggtatcggagcatcaaggtc |
31099910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 14 - 251
Target Start/End: Original strand, 31141204 - 31141441
Alignment:
| Q |
14 |
agagaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatac |
113 |
Q |
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| T |
31141204 |
agagaagagtgattatgaatattcagatacgtatcaactttgaatactagaaatcatttacttcccaaaaagatggtatttgaatgccaatataatatac |
31141303 |
T |
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| Q |
114 |
acacagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgag |
213 |
Q |
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| T |
31141304 |
acacagtgaacttcagaagaagatatcagaggttgatattcacagcatacattaattaatattatataacatatacatcaaatactgaagaacaagtgag |
31141403 |
T |
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| Q |
214 |
gtcagcttacactccgctggtatcggagcatcaaggtc |
251 |
Q |
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| T |
31141404 |
gtcagcttacactccgctggtatcggagcatcaaggtc |
31141441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 31147305 - 31147367
Alignment:
| Q |
28 |
atgaatattcagatacgtatcaacttt-gaatactagaaatcatttacttcccaaaaagatgg |
89 |
Q |
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| T |
31147305 |
atgaatattcagatacgtatcaacttttgaatactagaaatcatttacttcccaaaaagatgg |
31147367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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