View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_4 (Length: 710)

Name: NF11902_low_4
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_4
NF11902_low_4
[»] chr1 (1 HSPs)
chr1 (19-693)||(50234537-50235211)
[»] chr3 (6 HSPs)
chr3 (19-448)||(46954171-46954600)
chr3 (329-520)||(46954599-46954790)
chr3 (29-419)||(26701678-26702068)
chr3 (21-89)||(39464274-39464342)
chr3 (26-89)||(21789267-21789330)
chr3 (173-214)||(37152345-37152386)
[»] chr4 (1 HSPs)
chr4 (29-404)||(11052549-11052923)
[»] chr7 (3 HSPs)
chr7 (19-140)||(1448284-1448405)
chr7 (29-606)||(34361019-34361596)
chr7 (139-197)||(1447049-1447107)
[»] chr6 (1 HSPs)
chr6 (118-225)||(2961128-2961235)
[»] chr8 (1 HSPs)
chr8 (527-588)||(9792715-9792776)
[»] chr5 (1 HSPs)
chr5 (21-89)||(31468850-31468918)


Alignment Details
Target: chr1 (Bit Score: 579; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 579; E-Value: 0
Query Start/End: Original strand, 19 - 693
Target Start/End: Original strand, 50234537 - 50235211
Alignment:
Q  19 gtactcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaagg 118  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  50234537 gtactactcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatggtggacagtgaaattgtgcgtaacaagg 50234636  T
Q  119 agatcccttatatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaacca 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50234637 agatcccttatatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaacca 50234736  T
Q  219 aatcctccagctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaa 318  Q
    ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  50234737 aatcctcaagctccatatcagctgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcagtggaatctgcaatgaaaccggagaa 50234836  T
Q  319 gccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcag 418  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  50234837 gccagagaggtataagccggcactgttacgaataactcccccaaagcctgcacgaattggagttcatgaacaactcccatccacattaaggatatggcag 50234936  T
Q  419 tgatgattattgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtgga 518  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | || ||||||||||    
T  50234937 tgatgattattgctgttccatttgaccatacgatcaggagttgaatcaccgttgctttgaaaacttgctttgattgtatcggcataattttggatgtgga 50235036  T
Q  519 agttaagccgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccaccaaagccctgcaaagaacgtaaaggagcgcgg 618  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||     
T  50235037 agttaagccgagttggagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgtccaccaaagccctacaaagaacgtgatggagcgcga 50235136  T
Q  619 acctgttgaggaagttttgatccagttgtacgcacagttttcagagaagaaatcaggacttgtgaagccgatttt 693  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50235137 acctgttgagaaagttttgatctagttgtacgcacagttttcagagaagaaatcaggacttgtgaagccgatttt 50235211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 270; Significance: 1e-150; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 19 - 448
Target Start/End: Original strand, 46954171 - 46954600
Alignment:
Q  19 gtactcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaagg 118  Q
    |||||| ||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| | |    
T  46954171 gtactcatcatttgacgaagctcctaattttgccatgaaatcagcgcattggtttccttcacggaggcaatgctggacagtgaaattgtgcgaaactaag 46954270  T
Q  119 agatcccttatatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaacca 218  Q
    || ||| | |||||||||||||||||||||||||  |||||  |||| |||||||| |||||||| |||||||||||||||||  |||||||||||||||    
T  46954271 aggtccttaatatcttgaattaaaacggcataggcatgatactttgaagcttgacccgtaatgagattaattgagagaagcgaaaccgagtagcaaacca 46954370  T
Q  219 aatcctccagctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaa 318  Q
    | |||||    ||||||||   |||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||    
T  46954371 attcctcataatccatatctactgccataagaagaccgcggtgaattgccgagagctcagcaagcagaatgtcagtggaatctgcaatgaaaccggagaa 46954470  T
Q  319 gccagagaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcag 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||| |||||||||||||||    
T  46954471 gccagagaggtataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcag 46954570  T
Q  419 tgatgattattgctgttccatttgaccata 448  Q
    ||||||||||| ||||||||||||||||||    
T  46954571 tgatgattattactgttccatttgaccata 46954600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 329 - 520
Target Start/End: Original strand, 46954599 - 46954790
Alignment:
Q  329 tataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatgattat 428  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||||||| |||||||||||||||||||||||||    
T  46954599 tataaaccggcactgttacgaataactcccccaaaacctgcgcgaattggagttcttaaacagctcccatccacgttaaggatatggcagtgatgattat 46954698  T
Q  429 tgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtggaag 520  Q
    | ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||| ||||  ||||| |||||||||||||||    
T  46954699 tactgttccatttgaccatacgatcagtaggtgaaacgccgttgctttgaaaacttgctttgatagtatcagcagaattctggatgtggaag 46954790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 29 - 419
Target Start/End: Original strand, 26701678 - 26702068
Alignment:
Q  29 ttagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaaggagatccctta 128  Q
    ||||| |||||| | |||||||||||||||||||| |||||||||||||| | ||||||||  |||| || |||||||||||     | ||  ||| |||    
T  26701678 ttagaggaagcttcgaattttgccatgaaatcagcacattggtttccttctctgaggcaatgttggatagagaaattgtgcgaggataagatgtccttta 26701777  T
Q  129 tatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctccag 228  Q
    | |||||||||| ||| |||||||  || ||  |||| ||||||||||||||||| || || |||||||| ||||| ||||||||| |||  || |  |     
T  26701778 tgtcttgaattagaactgcataggcatggtactttgaagcttgacctgtaatgagattgatggagagaagagagtcagagtagcaagccatttcattaac 26701877  T
Q  229 ctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagagg 328  Q
      |||| || |  || ||| | | ||| ||||||||||| | |||||| || || | ||| ||| | || ||||||||||||||||| ||||||||||||    
T  26701878 tcccatgtctgaagctatgcggaaaccccggtgaattgcggtgagctctgcgagcaaaatatcagtagagtctgcaatgaaaccggagaagccagagagg 26701977  T
Q  329 tataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagt 419  Q
    || |  ||| ||||||| ||||||| ||||||| | |||| |||| ||||||| || |||||||||||||||||||| || ||||| ||||    
T  26701978 taaaggccgacactgtttcgaataattcccccataacctgcgcgagttggagtaccggaacaactcccatccacatttagaatatgacagt 26702068  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 39464342 - 39464274
Alignment:
Q  21 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 89  Q
    |||| ||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||    
T  39464342 actcttcatttgatgaagctcccaacttagccaagtaatccgcgcattggtttccttcacggagacaat 39464274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 21789330 - 21789267
Alignment:
Q  26 tcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 89  Q
    ||||| || ||||||||||| || |||| | |||| ||||||||||||||||||||||| ||||    
T  21789330 tcatttgatgaagctcccaacttggccaagtaatccgcgcattggtttccttcacggagacaat 21789267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 214
Target Start/End: Complemental strand, 37152386 - 37152345
Alignment:
Q  173 cctgtaatgaggttaattgagagaagcgagtccgagtagcaa 214  Q
    |||||||||||||| || |||||||| |||||||||||||||    
T  37152386 cctgtaatgaggttgatggagagaagggagtccgagtagcaa 37152345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 7e-54; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 29 - 404
Target Start/End: Complemental strand, 11052923 - 11052549
Alignment:
Q  29 ttagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaaggagatccctta 128  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||| | ||||||||  |||| || ||||||||||| |   | ||| ||| |||    
T  11052923 ttagaagaagctcctaattttgccatgaaatcagcgcattgttttccttctctgaggcaatgttggatagagaaattgtgcgaagataagaggtccttta 11052824  T
Q  129 tatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcctccag 228  Q
    ||||||||||||||||||||||||  || ||  |||| ||||||||||||||||| || || |||||||| ||||| ||||||||| |||  || || |     
T  11052823 tatcttgaattaaaacggcataggcatggtactttgaagcttgacctgtaatgagattgatggagagaagagagtcagagtagcaagccatttcttcaaa 11052724  T
Q  229 ctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccagagagg 328  Q
      |||| || |  || ||||||| | | ||||||||||  | ||||| ||| || | ||| ||| | || ||||||||||||||||| ||||||||||||    
T  11052723 tcccatgtctgaagctatgagaaaagcccggtgaattgtggtgagcttagcgagcaaaatatcagtagagtctgcaatgaaaccggagaagccagagagg 11052624  T
Q  329 tataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacat 404  Q
    || ||||||||||| ||  ||||||| |||||||| |||| |||| ||||||| || ||||||||| |||| ||||    
T  11052623 taaaaaccggcactattttgaataac-cccccaaaacctgcgcgagttggagtaccagaacaactctcatctacat 11052549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 98; Significance: 7e-48; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 19 - 140
Target Start/End: Complemental strand, 1448405 - 1448284
Alignment:
Q  19 gtactcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcgtaacaagg 118  Q
    |||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||    
T  1448405 gtactcatcattagacgaagctcccaattttgccatgaaatcaacgcattggtttccttcacagaggtaatggtggacagtgaaattgtgcgtaacaagg 1448306  T
Q  119 agatcccttatatcttgaatta 140  Q
    ||||||||||||||||||||||    
T  1448305 agatcccttatatcttgaatta 1448284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 29 - 606
Target Start/End: Complemental strand, 34361596 - 34361019
Alignment:
Q  29 ttagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaatagtggacagtgaaattgtgcg----taacaaggagatcc 124  Q
    ||||| |||||||| |||||||||||||||||||| |||||||||||||| | ||||||||  |||| || |||||||||||    ||| |||    |||    
T  34361596 ttagaggaagctccgaattttgccatgaaatcagcacattggtttccttccctgaggcaatgttggatagagaaattgtgcgaggataataag----tcc 34361501  T
Q  125 cttatatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaaccaaatcct 224  Q
     |||| ||||| |||| ||| |||||||  || ||  |||| ||||||||||||||||| || || |||||||| ||||| ||||||||| |||  || |    
T  34361500 tttatgtcttggattagaactgcataggcatggtactttgaggcttgacctgtaatgagattgatggagagaagagagtcagagtagcaagccatttcat 34361401  T
Q  225 ccagctccatatcagttgccatgagaagaccgcggtgaattgccgagagctcagcaagtagaatgtcaatggaatctgcaatgaaaccggaaaagccaga 324  Q
      |   |||| || |  || |||   | ||| ||||| ||||| | |||||| || || | ||||||  | || ||||| ||||||||||| |||| |||    
T  34361400 taactcccatgtctgaagctatgctgaaacctcggtggattgcggtgagctctgcgagcaaaatgtccgtagagtctgcgatgaaaccggagaagcaaga 34361301  T
Q  325 gaggtataaaccggcactgttacgaataactcccccaaagcctgtgcgaattggagttcctgaacaactcccatccacattaaggatatggcagtgatga 424  Q
    ||||||||  ||||||||||| ||||||| ||| ||| | |||| |||| ||||| | || |||||||| ||||| ||||| || || || ||| ||||     
T  34361300 gaggtataggccggcactgtttcgaataattcctccataacctgcgcgagttggaataccggaacaacttccatctacatttagaatgtgacagagatgg 34361201  T
Q  425 ttattgctgttccatttgaccatacgatcagaagttgaaacaccgttgctttgaaaacttgctttgattgtattggcagagttctggatgtggaagttaa 524  Q
    ||||| || |||||| | ||||| ||||||  ||  |   ||| | || ||||||| || | ||| || ||||  ||||| ||||| |||| |||  |||    
T  34361200 ttattactattccatctaaccattcgatcatgaggagtggcactgctgttttgaaagctggattttatggtatccgcagaattctgaatgtagaaactaa 34361101  T
Q  525 gccgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccaccaaagccctgcaaagaacgt 606  Q
    | || || || |||||||| || | ||||||||||||||||||  |||| ||||||| |||||| || ||||| ||||||||    
T  34361100 gtcgcgtaagggaccaagtatcattgctaaggcacatcatgttgtgatgcctccatgtccaccatagacctgctaagaacgt 34361019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 1447107 - 1447049
Alignment:
Q  139 taaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaa 197  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||    
T  1447107 taaaacggcataggaatgatatattgatgcttgacccgtaacgaggttaattgagagaa 1447049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 118 - 225
Target Start/End: Complemental strand, 2961235 - 2961128
Alignment:
Q  118 gagatcccttatatcttgaattaaaacggcataggagtgatatattgatgcttgacctgtaatgaggttaattgagagaagcgagtccgagtagcaaacc 217  Q
    ||||||| |||||||||| ||||| || |||||||  |||||  |||| |||   |||||||| || || || |||||||||||||||||||||||| ||    
T  2961235 gagatcctttatatcttgtattaagacagcataggcatgatagcttgaagctcttcctgtaataagattgatggagagaagcgagtccgagtagcaagcc 2961136  T
Q  218 aaatcctc 225  Q
    || |||||    
T  2961135 aactcctc 2961128  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 527 - 588
Target Start/End: Complemental strand, 9792776 - 9792715
Alignment:
Q  527 cgagttagagaccaagtttcttggctaaggcacatcatgtttcgatgtctccatgaccacca 588  Q
    |||||||||||||||||||| |  | |||| |||||| ||||||||||||||||| ||||||    
T  9792776 cgagttagagaccaagtttcgttaccaaggtacatcaagtttcgatgtctccatgtccacca 9792715  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 31468918 - 31468850
Alignment:
Q  21 actcctcattagaagaagctcccaattttgccatgaaatcagcgcattggtttccttcacggaggcaat 89  Q
    |||| ||||| || ||||||||||||||||||| | |||| || ||||| |||||||||||||| ||||    
T  31468918 actcttcattcgatgaagctcccaattttgccaagtaatccgcacattgatttccttcacggagacaat 31468850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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