View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11902_low_41 (Length: 241)

Name: NF11902_low_41
Description: NF11902
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11902_low_41
NF11902_low_41
[»] chr3 (2 HSPs)
chr3 (3-101)||(35496152-35496250)
chr3 (167-224)||(35496316-35496373)
[»] chr2 (1 HSPs)
chr2 (167-229)||(1662513-1662575)
[»] chr7 (2 HSPs)
chr7 (172-224)||(49081361-49081413)
chr7 (48-101)||(49080854-49080907)
[»] chr1 (2 HSPs)
chr1 (1-83)||(7900198-7900280)
chr1 (1-33)||(19322843-19322875)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 35496152 - 35496250
Alignment:
Q  3 acttctcaattatttaaatcattcaactacannnnnnnaatttccatactactcttctaatactctaaaatgagtcccactattcttgcaatatacttc 101  Q
    |||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  35496152 acttctcaattatttaaatcattcaactacatttttttaatttccatactactcttctaatactctaaaataagtcccactagtcttgcaatatacttc 35496250  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 35496316 - 35496373
Alignment:
Q  167 ggaagctaagacaccgtagcaatgcactgccaccatgaaaaagtaaagacacggtact 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35496316 ggaagctaagacaccgtagcaatgcactgccaccatgaaaaagtaaagacacggtact 35496373  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 1662513 - 1662575
Alignment:
Q  167 ggaagctaagacaccgtagcaatgcactgccaccatgaaaaagtaaagacacggtactgatga 229  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||    
T  1662513 ggaagctaagacaccgtagaaatgcagtgccaccatgaaaaagtaaagacacggtactaatga 1662575  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 49081361 - 49081413
Alignment:
Q  172 ctaagacaccgtagcaatgcactgccaccatgaaaaagtaaagacacggtact 224  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  49081361 ctaagacaccgtagtaatgcagtgccaccatgaaaaagtaaagacacggtact 49081413  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 101
Target Start/End: Original strand, 49080854 - 49080907
Alignment:
Q  48 atactactcttctaatactctaaaatgagtcccactattcttgcaatatacttc 101  Q
    |||||| |||||||||||||||||||| |||||| || |||| |||||||||||    
T  49080854 atactaatcttctaatactctaaaatgggtcccattaatcttacaatatacttc 49080907  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 7900198 - 7900280
Alignment:
Q  1 atacttctcaattatttaaatcattcaactacannnnnnnaatttccatactactcttctaatactctaaaatgagtcccact 83  Q
    ||||||| |||||||||||| || |||||||||       ||| ||||||| |||| ||||| ||||||||||| ||||||||    
T  7900198 atacttcccaattatttaaaccactcaactacattttctaaatatccataccactcctctaaaactctaaaatgggtcccact 7900280  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19322875 - 19322843
Alignment:
Q  1 atacttctcaattatttaaatcattcaactaca 33  Q
    |||||||||||||||||||| ||||||||||||    
T  19322875 atacttctcaattatttaaaccattcaactaca 19322843  T

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